Result of FASTA (ccds) for
pFN21AE3673
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3673, 370 aa
1>>>pF1KE3673 370 - 370 aa - 370 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3844+/-0.00104; mu= 10.6759+/- 0.062
mean_var=79.0130+/-16.003, 0's: 0 Z-trim(105.3): 102 B-trim: 290 in 1/48
Lambda= 0.144286
statistics sampled from 8230 (8344) to 8230 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.256), width: 16
Scan time: 2.620
The best scores are: opt bits E(32554)
CCDS31952.1 USP12 gene_id:219333|Hs108|chr13 ( 370) 2478 525.6 2.7e-149
CCDS47053.1 USP46 gene_id:64854|Hs108|chr4 ( 366) 2190 465.6 2.9e-131
CCDS47054.1 USP46 gene_id:64854|Hs108|chr4 ( 359) 2150 457.3 9.3e-129
CCDS61632.1 USP8 gene_id:9101|Hs108|chr15 (1012) 421 97.5 5.3e-20
CCDS10137.1 USP8 gene_id:9101|Hs108|chr15 (1118) 421 97.5 5.8e-20
CCDS53944.1 USP50 gene_id:373509|Hs108|chr15 ( 334) 331 78.7 8.4e-15
CCDS2418.1 USP37 gene_id:57695|Hs108|chr2 ( 979) 328 78.2 3.5e-14
CCDS58370.1 USP3 gene_id:9960|Hs108|chr15 ( 476) 311 74.5 2.1e-13
CCDS32265.1 USP3 gene_id:9960|Hs108|chr15 ( 520) 311 74.6 2.3e-13
CCDS44084.1 USP48 gene_id:84196|Hs108|chr1 ( 485) 310 74.3 2.4e-13
CCDS81277.1 USP48 gene_id:84196|Hs108|chr1 ( 983) 310 74.4 4.7e-13
CCDS30623.1 USP48 gene_id:84196|Hs108|chr1 (1035) 310 74.4 4.9e-13
CCDS32755.1 USP36 gene_id:57602|Hs108|chr17 (1123) 309 74.2 6.1e-13
CCDS47535.1 USP42 gene_id:84132|Hs108|chr7 (1316) 296 71.5 4.6e-12
CCDS66941.1 USP7 gene_id:7874|Hs108|chr16 (1086) 292 70.7 6.9e-12
CCDS32385.1 USP7 gene_id:7874|Hs108|chr16 (1102) 292 70.7 7e-12
CCDS58189.1 USP2 gene_id:9099|Hs108|chr11 ( 362) 283 68.7 9.2e-12
CCDS8423.1 USP2 gene_id:9099|Hs108|chr11 ( 396) 283 68.7 1e-11
CCDS77901.1 USP17L15 gene_id:100288520|Hs108|chr4 ( 559) 283 68.7 1.4e-11
CCDS8422.1 USP2 gene_id:9099|Hs108|chr11 ( 605) 283 68.7 1.5e-11
CCDS43713.1 USP17L2 gene_id:377630|Hs108|chr8 ( 530) 280 68.1 2e-11
CCDS59467.1 USP17L5 gene_id:728386|Hs108|chr4 ( 530) 279 67.9 2.3e-11
CCDS59457.1 USP17L13 gene_id:100287238|Hs108|chr4 ( 530) 277 67.5 3.1e-11
CCDS59463.1 USP17L22 gene_id:100287513|Hs108|chr4 ( 530) 277 67.5 3.1e-11
CCDS59458.1 USP17L17 gene_id:100287327|Hs108|chr4 ( 530) 277 67.5 3.1e-11
CCDS78298.1 USP17L1 gene_id:401447|Hs108|chr8 ( 530) 277 67.5 3.1e-11
CCDS59461.1 USP17L20 gene_id:100287441|Hs108|chr4 ( 530) 276 67.3 3.6e-11
CCDS59470.1 USP17L29 gene_id:728405|Hs108|chr4 ( 530) 276 67.3 3.6e-11
CCDS59471.1 USP17L30 gene_id:728419|Hs108|chr4 ( 530) 276 67.3 3.6e-11
CCDS59460.1 USP17L19 gene_id:100287404|Hs108|chr4 ( 530) 276 67.3 3.6e-11
CCDS59466.1 USP17L26 gene_id:728379|Hs108|chr4 ( 530) 276 67.3 3.6e-11
CCDS59459.1 USP17L18 gene_id:100287364|Hs108|chr4 ( 530) 276 67.3 3.6e-11
CCDS59465.1 USP17L25 gene_id:728373|Hs108|chr4 ( 530) 276 67.3 3.6e-11
CCDS59455.1 USP17L11 gene_id:100287178|Hs108|chr4 ( 530) 276 67.3 3.6e-11
CCDS59469.1 USP17L28 gene_id:728400|Hs108|chr4 ( 530) 276 67.3 3.6e-11
CCDS59464.1 USP17L24 gene_id:728369|Hs108|chr4 ( 530) 276 67.3 3.6e-11
CCDS59468.1 USP17L27 gene_id:728393|Hs108|chr4 ( 530) 276 67.3 3.6e-11
CCDS30920.1 USP21 gene_id:27005|Hs108|chr1 ( 565) 275 67.1 4.4e-11
CCDS78301.1 USP17L3 gene_id:645836|Hs108|chr8 ( 530) 273 66.6 5.5e-11
CCDS59454.1 USP17L10 gene_id:100287144|Hs108|chr4 ( 530) 272 66.4 6.4e-11
CCDS59462.1 USP17L21 gene_id:100287478|Hs108|chr4 ( 530) 272 66.4 6.4e-11
CCDS59456.1 USP17L12 gene_id:100287205|Hs108|chr4 ( 530) 272 66.4 6.4e-11
CCDS14277.1 USP11 gene_id:8237|Hs108|chrX ( 963) 273 66.7 9.6e-11
>>CCDS31952.1 USP12 gene_id:219333|Hs108|chr13 (370 aa)
initn: 2478 init1: 2478 opt: 2478 Z-score: 2793.9 bits: 525.6 E(32554): 2.7e-149
Smith-Waterman score: 2478; 99.7% identity (99.7% similar) in 370 aa overlap (1-370:1-370)
10 20 30 40 50 60
pF1KE3 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RPFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RPFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVDEIFQGTL
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS31 MQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVHEIFQGTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
310 320 330 340 350 360
370
pF1KE3 GYILFYQSRD
::::::::::
CCDS31 GYILFYQSRD
370
>>CCDS47053.1 USP46 gene_id:64854|Hs108|chr4 (366 aa)
initn: 2242 init1: 2190 opt: 2190 Z-score: 2469.9 bits: 465.6 E(32554): 2.9e-131
Smith-Waterman score: 2190; 88.3% identity (96.2% similar) in 366 aa overlap (5-370:1-366)
10 20 30 40 50 60
pF1KE3 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFC
::: ..::::.::.:::::::.:::::::.::::::::::::::::::::::::::
CCDS47 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFC
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 RPFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNY
:::::.:::::.: .:::.::::::::::::::::::::::::::::.::::::.:::::
CCDS47 RPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNY
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 MQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVDEIFQGTL
:::::::::::::::::::::::.:::::::.: :::... .:. :. ::: :::::::
CCDS47 MQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 TNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQ
:::::::.:::.::::::::::::::::::::::::: :::::::::: ::::: : :::
CCDS47 TNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE3 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY
::.:::.::::::::::::::::::.::::::::::::::::::::::::.::.: ::::
CCDS47 EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMY
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE3 DLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
:::::::::::::::::::.::::: ::::::::::::::::::::::::::::::::::
CCDS47 DLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
300 310 320 330 340 350
370
pF1KE3 GYILFYQSRD
:::::::::.
CCDS47 GYILFYQSRE
360
>>CCDS47054.1 USP46 gene_id:64854|Hs108|chr4 (359 aa)
initn: 2183 init1: 2131 opt: 2150 Z-score: 2425.1 bits: 457.3 E(32554): 9.3e-129
Smith-Waterman score: 2150; 88.5% identity (96.1% similar) in 357 aa overlap (14-370:3-359)
10 20 30 40 50 60
pF1KE3 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFC
: .:.:::::::.:::::::.::::::::::::::::::::::::::
CCDS47 MNCFQGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFC
10 20 30 40
70 80 90 100 110 120
pF1KE3 RPFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNY
:::::.:::::.: .:::.::::::::::::::::::::::::::::.::::::.:::::
CCDS47 RPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNY
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 MQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVDEIFQGTL
:::::::::::::::::::::::.:::::::.: :::... .:. :. ::: :::::::
CCDS47 MQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 TNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQ
:::::::.:::.::::::::::::::::::::::::: :::::::::: ::::: : :::
CCDS47 TNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE3 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY
::.:::.::::::::::::::::::.::::::::::::::::::::::::.::.: ::::
CCDS47 EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMY
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE3 DLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
:::::::::::::::::::.::::: ::::::::::::::::::::::::::::::::::
CCDS47 DLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES
290 300 310 320 330 340
370
pF1KE3 GYILFYQSRD
:::::::::.
CCDS47 GYILFYQSRE
350
>>CCDS61632.1 USP8 gene_id:9101|Hs108|chr15 (1012 aa)
initn: 252 init1: 177 opt: 421 Z-score: 472.5 bits: 97.5 E(32554): 5.3e-20
Smith-Waterman score: 469; 31.0% identity (57.1% similar) in 352 aa overlap (40-368:672-1002)
10 20 30 40 50 60
pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL--------YFCR
:: :.::::: ::.:: : :: :
CCDS61 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNR
650 660 670 680 690 700
70 80 90 100 110 120
pF1KE3 PFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYM
. . .. .: . .. ..... : . . : :: : . : :. : .:
CCDS61 NCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY--ISPKDFKITIGKINDQFAGYS
710 720 730 740 750
130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTW-----VDE--
:::..:.: .:. : :.:. .. . : . : :. .. .. . .: ..:
CCDS61 QQDSQELLLFLM----DGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESI
760 770 780 790 800 810
180 190 200 210 220
pF1KE3 ---IFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSIT--HCLRGFSNTETLCSEY
.::: . . ..::::. : : :. ::. . .... : ::: ::. : : ..
CCDS61 IVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN
820 830 840 850 860 870
230 240 250 260 270 280
pF1KE3 KYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLE-LRLFN
..:: .::..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
CCDS61 RFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQ
880 890 900 910 920 930
290 300 310 320 330 340
pF1KE3 TSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKS--HDFWLLFDDDIVEKIDAQAIEE
: . :.: .: : : : . ::: : :. .. :. ::: : :......
CCDS61 YVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-
940 950 960 970 980 990
350 360 370
pF1KE3 FYGLTSDISKNSESGYILFYQSRD
: ..::::: :
CCDS61 -----------SSAAYILFYTSLGPRVTDVAT
1000 1010
>>CCDS10137.1 USP8 gene_id:9101|Hs108|chr15 (1118 aa)
initn: 252 init1: 177 opt: 421 Z-score: 471.8 bits: 97.5 E(32554): 5.8e-20
Smith-Waterman score: 469; 31.0% identity (57.1% similar) in 352 aa overlap (40-368:778-1108)
10 20 30 40 50 60
pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL--------YFCR
:: :.::::: ::.:: : :: :
CCDS10 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNR
750 760 770 780 790 800
70 80 90 100 110 120
pF1KE3 PFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYM
. . .. .: . .. ..... : . . : :: : . : :. : .:
CCDS10 NCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY--ISPKDFKITIGKINDQFAGYS
810 820 830 840 850 860
130 140 150 160 170
pF1KE3 QQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTW-----VDE--
:::..:.: .:. : :.:. .. . : . : :. .. .. . .: ..:
CCDS10 QQDSQELLLFLM----DGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESI
870 880 890 900 910 920
180 190 200 210 220
pF1KE3 ---IFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSIT--HCLRGFSNTETLCSEY
.::: . . ..::::. : : :. ::. . .... : ::: ::. : : ..
CCDS10 IVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN
930 940 950 960 970 980
230 240 250 260 270 280
pF1KE3 KYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLE-LRLFN
..:: .::..... :.... ::: .: .:::::.: . .. ::. : :::: : : .
CCDS10 RFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQ
990 1000 1010 1020 1030
290 300 310 320 330 340
pF1KE3 TSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKS--HDFWLLFDDDIVEKIDAQAIEE
: . :.: .: : : : . ::: : :. .. :. ::: : :......
CCDS10 YVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK-
1040 1050 1060 1070 1080 1090
350 360 370
pF1KE3 FYGLTSDISKNSESGYILFYQSRD
: ..::::: :
CCDS10 -----------SSAAYILFYTSLGPRVTDVAT
1100 1110
>>CCDS53944.1 USP50 gene_id:373509|Hs108|chr15 (334 aa)
initn: 303 init1: 135 opt: 331 Z-score: 379.2 bits: 78.7 E(32554): 8.4e-15
Smith-Waterman score: 331; 28.2% identity (52.9% similar) in 308 aa overlap (25-324:31-329)
10 20 30 40 50
pF1KE3 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVL
:: .: : . :: :.:::: :..
CCDS53 MTSQPSLPADDFDIYHVLAECTDYYDTLPVKEADGNQ-PHFQGVTGLWNLGNTCCVNAIS
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 QALYFCRPFREKVLAYKSQPRKKESLLTCLADLFHSIATQK--KKVGVIPPKKFITRLRK
: : :. : :. : ... . .: : . :. . :. : . : .
CCDS53 QCLCSILPLVEYFLTGKYITALQNDC-SEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 ENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNN-STPDPTW
: . :::::.::: .:: . . :.. . ..... .:. . . : . .
CCDS53 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRS--YEKGSTQRCCRKWITTETSI
120 130 140 150 160 170
180 190 200 210 220
pF1KE3 VDEIFQGTLTNETRCLTCETISSKDEDF--LDLSVDVEQNTSITHCLRGFSNTETLCSEY
. ..:. :. :: :: . :.: : ..: . . . :. ::. : . ..: .
CCDS53 ITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDALTWNN
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE3 KYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPL---ELRL
. .: :..:::. : ...: : :. .::::: . .: :: . .:: .:
CCDS53 EIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKR--KLRTDIHYPLTNLDLTP
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE3 FNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEE
. : : :.: ::: : :. . ::: :. :.
CCDS53 YICSIFRKYPK--YNLCAVVNHFGDLDG-GHYTAFCKNSVTQA
300 310 320 330
350 360 370
pF1KE3 FYGLTSDISKNSESGYILFYQSRD
>>CCDS2418.1 USP37 gene_id:57695|Hs108|chr2 (979 aa)
initn: 229 init1: 92 opt: 328 Z-score: 368.1 bits: 78.2 E(32554): 3.5e-14
Smith-Waterman score: 328; 32.0% identity (56.7% similar) in 275 aa overlap (40-296:342-600)
10 20 30 40 50 60
pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKVLA
:. :.::::: :..::.:. . : . .:
CCDS24 SVKKLRCNQDYTGWNKPRVPLSSHQQQQLQGFSNLGNTCYMNAILQSLFSLQSFANDLLK
320 330 340 350 360 370
70 80 90 100 110 120
pF1KE3 YKSQPRKK---ESLLTCLADLF--HSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQD
.. : :: ..:. .: :. ..: ... : .. :: . . : :..:::.:
CCDS24 -QGIPWKKIPLNALIRRFAHLLVKKDICNSETKKDLL--KKVKNAISATAERFSGYMQND
380 390 400 410 420
130 140 150 160 170 180
pF1KE3 AHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVDEIFQGTLTN--
:::::. : : :.:. .:: : . ...:.: .:: . . ..::
CCDS24 AHEFLSQCL----DQLKED--MEKLNKTWKTEPVSGEEN--SPDISATRAYTCPVITNLE
430 440 450 460 470 480
190 200 210 220 230
pF1KE3 -ETR----CLTCETISSKDEDFLDLSVDVEQNT------SITHCLRGFSNTETLCSEYKY
:.. : .: : : :.: :::.:. . :: : : .: : .:
CCDS24 FEVQHSIICKACGEIIPKREQFNDLSIDLPRRKKPLPPRSIQDSLDLFFRAE----ELEY
490 500 510 520 530
240 250 260 270 280 290
pF1KE3 YCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSG
::.: .: : : : ..:: .: :::::... : .:.. .:..: : : .
CCDS24 SCEKCGGKC-ALVRHKFNRLPRVLILHLKRYSFNVALSLNNKIGQQVIIPRYLTLSSHCT
540 550 560 570 580 590
300 310 320 330 340 350
pF1KE3 DATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLT
. :.:
CCDS24 ENTKPPFTLGWSAHMAISRPLKASQMVNSCITSPSTPSKKFTFKSKSSLALCLDSDSEDE
600 610 620 630 640 650
>>CCDS58370.1 USP3 gene_id:9960|Hs108|chr15 (476 aa)
initn: 515 init1: 169 opt: 311 Z-score: 354.2 bits: 74.5 E(32554): 2.1e-13
Smith-Waterman score: 507; 32.0% identity (58.9% similar) in 341 aa overlap (40-344:116-454)
10 20 30 40 50 60
pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL----YFCRPFRE
:: :.::::. :..::.: :: :.:
CCDS58 RHKKRKLLENSTLNSKLLKVNGSTTAICATGLRNLGNTCFMNAILQSLSNIEQFCCYFKE
90 100 110 120 130 140
70 80 90 100 110
pF1KE3 ---------KVLAYKS-QPRKKESLLTCLADLFHSI--ATQKKKVGVIPPKKFITRLRKE
:. . .. . :.. . . :.. :.. : . . .. :.... . :
CCDS58 LPAVELRNGKTAGRRTYHTRSQGDNNVSLVEEFRKTLCALWQGSQTAFSPESLFYVVWKI
150 160 170 180 190 200
120 130 140 150 160 170
pF1KE3 NELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPD--PTW
: .:.:::::::. :::. . :: . .... : ... . .:. . :
CCDS58 MPNFRGYQQQDAHEFMRYLLDHLHLELQGGFNGVSRSAILQENSTLSASNKCCINGASTV
210 220 230 240 250 260
180 190 200 210
pF1KE3 VDEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV-----------EQN---TSITHCLR
: :: : : ::. :: : : : : . :::::.:. ..: :. :::
CCDS58 VTAIFGGILQNEVNCLICGTESRKFDPFLDLSLDIPSQFRSKRSKNQENGPVCSLRDCLR
270 280 290 300 310 320
220 230 240 250 260 270
pF1KE3 GFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYR
.:.. : : :.:..:..::.. :.. ..::: .: ::::::.. :. .:..
CCDS58 SFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKVLCLHLKRFHWTAYLR--NKVDTY
330 340 350 360 370 380
280 290 300 310 320 330
pF1KE3 VVFPL---ELRLFNTSGDATNPDR-MYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDD
: ::: ... . . ..:. .:::.::::: ::: . ::: : . . :. :.:
CCDS58 VEFPLRGLDMKCYLLEPENSGPESCLYDLAAVVVHHGSGVGSGHYTAYATHEGRWFHFND
390 400 410 420 430 440
340 350 360 370
pF1KE3 DIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQSRD
. : : ...
CCDS58 STVTLTDEETVVKAKAYILFYVEHQAKAGSDKL
450 460 470
>>CCDS32265.1 USP3 gene_id:9960|Hs108|chr15 (520 aa)
initn: 515 init1: 169 opt: 311 Z-score: 353.6 bits: 74.6 E(32554): 2.3e-13
Smith-Waterman score: 507; 32.0% identity (58.9% similar) in 341 aa overlap (40-344:160-498)
10 20 30 40 50 60
pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL----YFCRPFRE
:: :.::::. :..::.: :: :.:
CCDS32 RHKKRKLLENSTLNSKLLKVNGSTTAICATGLRNLGNTCFMNAILQSLSNIEQFCCYFKE
130 140 150 160 170 180
70 80 90 100 110
pF1KE3 ---------KVLAYKS-QPRKKESLLTCLADLFHSI--ATQKKKVGVIPPKKFITRLRKE
:. . .. . :.. . . :.. :.. : . . .. :.... . :
CCDS32 LPAVELRNGKTAGRRTYHTRSQGDNNVSLVEEFRKTLCALWQGSQTAFSPESLFYVVWKI
190 200 210 220 230 240
120 130 140 150 160 170
pF1KE3 NELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPD--PTW
: .:.:::::::. :::. . :: . .... : ... . .:. . :
CCDS32 MPNFRGYQQQDAHEFMRYLLDHLHLELQGGFNGVSRSAILQENSTLSASNKCCINGASTV
250 260 270 280 290 300
180 190 200 210
pF1KE3 VDEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV-----------EQN---TSITHCLR
: :: : : ::. :: : : : : . :::::.:. ..: :. :::
CCDS32 VTAIFGGILQNEVNCLICGTESRKFDPFLDLSLDIPSQFRSKRSKNQENGPVCSLRDCLR
310 320 330 340 350 360
220 230 240 250 260 270
pF1KE3 GFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYR
.:.. : : :.:..:..::.. :.. ..::: .: ::::::.. :. .:..
CCDS32 SFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKVLCLHLKRFHWTAYLR--NKVDTY
370 380 390 400 410 420
280 290 300 310 320 330
pF1KE3 VVFPL---ELRLFNTSGDATNPDR-MYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDD
: ::: ... . . ..:. .:::.::::: ::: . ::: : . . :. :.:
CCDS32 VEFPLRGLDMKCYLLEPENSGPESCLYDLAAVVVHHGSGVGSGHYTAYATHEGRWFHFND
430 440 450 460 470 480
340 350 360 370
pF1KE3 DIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQSRD
. : : ...
CCDS32 STVTLTDEETVVKAKAYILFYVEHQAKAGSDKL
490 500 510 520
>>CCDS44084.1 USP48 gene_id:84196|Hs108|chr1 (485 aa)
initn: 297 init1: 116 opt: 310 Z-score: 352.9 bits: 74.3 E(32554): 2.4e-13
Smith-Waterman score: 387; 28.3% identity (54.6% similar) in 339 aa overlap (38-360:88-396)
10 20 30 40 50
pF1KE3 SKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQ----------AL
. ::.:.: ::: :. :: ::
CCDS44 IGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQAL
60 70 80 90 100 110
60 70 80 90 100 110
pF1KE3 YFC-RPFREKVLAYKSQPRKK-ESLLTC--LADLFHSIATQKKKVGVIPPKKFITRLRKE
:.: . .:. : .: : : : :: . ..... : :. :. :
CCDS44 YLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQNSNRR--YIDPSGFVKALG--
120 130 140 150 160 170
120 130 140 150 160 170
pF1KE3 NELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVD
.:. .::::.:: . ... . : :. ::.. . : :: :.
CCDS44 ---LDTGQQQDAQEFSKLFMSLLEDTLS---KQKNPDVR----NI-------------VQ
180 190 200 210
180 190 200 210 220 230
pF1KE3 EIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYC
. : : . : : : :. : .: .... . ..: :. : . : : .. .:.:
CCDS44 QQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFC
220 230 240 250 260 270
240 250 260 270 280 290
pF1KE3 EECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDA
:.:.:::.: ..... .:: : :.: :: . : . ::. . : :. .. .
CCDS44 ENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFS-EILDMEPYVEH
280 290 300 310 320
300 310 320 330 340 350
pF1KE3 TNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDF--WLLFDDDIVEKIDAQAIEEFYGLT
. . .:.: ::..: : . ::::: ::. . : :.:. .::.... .. :.
CCDS44 KGGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQ--LGIE
330 340 350 360 370 380
360 370
pF1KE3 SDISKNSESGYILFYQSRD
:... :.:
CCDS44 EDLAEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKF
390 400 410 420 430 440
370 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:37:20 2016 done: Sun Nov 6 22:37:21 2016
Total Scan time: 2.620 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]