FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1475, 164 aa 1>>>pF1KE1475 164 - 164 aa - 164 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0749+/-0.000321; mu= 14.1313+/- 0.020 mean_var=73.5595+/-14.839, 0's: 0 Z-trim(116.6): 8 B-trim: 1376 in 1/54 Lambda= 0.149539 statistics sampled from 27881 (27889) to 27881 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.327), width: 16 Scan time: 4.110 The best scores are: opt bits E(85289) NP_932170 (OMIM: 186780,610163) T-cell surface gly ( 164) 1097 245.2 3.5e-65 NP_000725 (OMIM: 186780,610163) T-cell surface gly ( 163) 1078 241.1 6e-64 XP_011508446 (OMIM: 186780,610163) PREDICTED: T-ce ( 172) 977 219.3 2.3e-57 XP_016858289 (OMIM: 186780,610163) PREDICTED: T-ce ( 195) 976 219.2 2.9e-57 XP_011508447 (OMIM: 186780,610163) PREDICTED: T-ce ( 171) 958 215.2 3.9e-56 XP_016858290 (OMIM: 186780,610163) PREDICTED: T-ce ( 194) 957 215.0 5e-56 NP_004097 (OMIM: 147139) high affinity immunoglobu ( 86) 171 45.2 3e-05 >>NP_932170 (OMIM: 186780,610163) T-cell surface glycopr (164 aa) initn: 1097 init1: 1097 opt: 1097 Z-score: 1291.1 bits: 245.2 E(85289): 3.5e-65 Smith-Waterman score: 1097; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164) 10 20 30 40 50 60 pF1KE1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_932 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_932 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA 70 80 90 100 110 120 130 140 150 160 pF1KE1 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR :::::::::::::::::::::::::::::::::::::::::::: NP_932 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 130 140 150 160 >>NP_000725 (OMIM: 186780,610163) T-cell surface glycopr (163 aa) initn: 697 init1: 675 opt: 1078 Z-score: 1269.0 bits: 241.1 E(85289): 6e-64 Smith-Waterman score: 1078; 99.4% identity (99.4% similar) in 164 aa overlap (1-164:1-163) 10 20 30 40 50 60 pF1KE1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: NP_000 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKP-RRKNPQEGLYNELQKDKMA 70 80 90 100 110 130 140 150 160 pF1KE1 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR :::::::::::::::::::::::::::::::::::::::::::: NP_000 EAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 120 130 140 150 160 >>XP_011508446 (OMIM: 186780,610163) PREDICTED: T-cell s (172 aa) initn: 976 init1: 976 opt: 977 Z-score: 1150.9 bits: 219.3 E(85289): 2.3e-57 Smith-Waterman score: 977; 97.3% identity (98.0% similar) in 150 aa overlap (15-164:23-172) 10 20 30 40 50 pF1KE1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLR : . ::::::::::::::::::::::::::::::::: XP_011 MVRSWEKGLHSLVRTPLTTSEDQQVFEEAQSFGLLDPKLCYLLDGILFIYGVILTALFLR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 VKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYN 70 80 90 100 110 120 120 130 140 150 160 pF1KE1 ELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR :::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 130 140 150 160 170 >>XP_016858289 (OMIM: 186780,610163) PREDICTED: T-cell s (195 aa) initn: 1083 init1: 976 opt: 976 Z-score: 1149.0 bits: 219.2 E(85289): 2.9e-57 Smith-Waterman score: 1025; 84.1% identity (84.1% similar) in 195 aa overlap (1-164:1-195) 10 20 pF1KE1 MKWKALFTAAILQAQLPIT-------------------------------EAQSFGLLDP ::::::::::::::::::: :::::::::: XP_016 MKWKALFTAAILQAQLPITASSLPHPTQQSPEKKVLGPGGCTCRHNRFCNEAQSFGLLDP 10 20 30 40 50 60 30 40 50 60 70 80 pF1KE1 KLCYLLDGILFIYGVILTALFLRVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KLCYLLDGILFIYGVILTALFLRVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKR 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE1 RGRDPEMGGKPQRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RGRDPEMGGKPQRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTAT 130 140 150 160 170 180 150 160 pF1KE1 KDTYDALHMQALPPR ::::::::::::::: XP_016 KDTYDALHMQALPPR 190 >>XP_011508447 (OMIM: 186780,610163) PREDICTED: T-cell s (171 aa) initn: 576 init1: 554 opt: 958 Z-score: 1128.8 bits: 215.2 E(85289): 3.9e-56 Smith-Waterman score: 958; 96.7% identity (97.3% similar) in 150 aa overlap (15-164:23-171) 10 20 30 40 50 pF1KE1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLR : . ::::::::::::::::::::::::::::::::: XP_011 MVRSWEKGLHSLVRTPLTTSEDQQVFEEAQSFGLLDPKLCYLLDGILFIYGVILTALFLR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 VKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYN :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: XP_011 VKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKP-RRKNPQEGLYN 70 80 90 100 110 120 130 140 150 160 pF1KE1 ELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR :::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 120 130 140 150 160 170 >>XP_016858290 (OMIM: 186780,610163) PREDICTED: T-cell s (194 aa) initn: 683 init1: 554 opt: 957 Z-score: 1126.9 bits: 215.0 E(85289): 5e-56 Smith-Waterman score: 1006; 83.6% identity (83.6% similar) in 195 aa overlap (1-164:1-194) 10 20 pF1KE1 MKWKALFTAAILQAQLPIT-------------------------------EAQSFGLLDP ::::::::::::::::::: :::::::::: XP_016 MKWKALFTAAILQAQLPITASSLPHPTQQSPEKKVLGPGGCTCRHNRFCNEAQSFGLLDP 10 20 30 40 50 60 30 40 50 60 70 80 pF1KE1 KLCYLLDGILFIYGVILTALFLRVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KLCYLLDGILFIYGVILTALFLRVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKR 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE1 RGRDPEMGGKPQRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTAT ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RGRDPEMGGKP-RRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTAT 130 140 150 160 170 150 160 pF1KE1 KDTYDALHMQALPPR ::::::::::::::: XP_016 KDTYDALHMQALPPR 180 190 >>NP_004097 (OMIM: 147139) high affinity immunoglobulin (86 aa) initn: 170 init1: 114 opt: 171 Z-score: 215.3 bits: 45.2 E(85289): 3e-05 Smith-Waterman score: 171; 33.7% identity (73.3% similar) in 86 aa overlap (6-90:1-83) 10 20 30 40 50 pF1KE1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFS-RSA .. :..: : . .: ..: .:.:::.::.:::.::..:: :. :.:.. :.: NP_004 MIPAVVLLLLLLVEQAAALG--EPQLCYILDAILFLYGIVLTLLYCRLKIQVRKA 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKM .:... . .:. :. .: :..: ... NP_004 AITSYEKS-DGVYTGLSTRNQETYETLKHEKPPQ 60 70 80 120 130 140 150 160 pF1KE1 AEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR 164 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:38:30 2016 done: Sun Nov 6 22:38:30 2016 Total Scan time: 4.110 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]