FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8981, 377 aa 1>>>pF1KB8981 377 - 377 aa - 377 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 18.6310+/-0.00136; mu= -42.0240+/- 0.083 mean_var=876.4782+/-182.247, 0's: 0 Z-trim(116.3): 52 B-trim: 0 in 0/53 Lambda= 0.043322 statistics sampled from 16836 (16872) to 16836 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.518), width: 16 Scan time: 3.560 The best scores are: opt bits E(32554) CCDS3541.1 MUC7 gene_id:4589|Hs108|chr4 ( 377) 2534 173.0 3.9e-43 >>CCDS3541.1 MUC7 gene_id:4589|Hs108|chr4 (377 aa) initn: 2534 init1: 2534 opt: 2534 Z-score: 887.9 bits: 173.0 E(32554): 3.9e-43 Smith-Waterman score: 2534; 99.7% identity (99.7% similar) in 377 aa overlap (1-377:1-377) 10 20 30 40 50 60 pF1KB8 MKTLPLFVCICALSACFSFSEGRERDHELRHRRHHHQSPKSHFELPHYPGLLAHQKPFIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 MKTLPLFVCICALSACFSFSEGRERDHELRHRRHHHQSPKSHFELPHYPGLLAHQKPFIR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 KSYKCLHKRCRPKLPPSPNNPPKFPNPHQPPKHPDKNSSVVNPTLVATTQIPSVTFPSAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 KSYKCLHKRCRPKLPPSPNNPPKFPNPHQPPKHPDKNSSVVNPTLVATTQIPSVTFPSAS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 TKITTLPNVTFLPQNATTISSRENVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 TKITTLPNVTFLPQNATTISSRENVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 SSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 SSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 PSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 PSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 QETTAAPITTPNSSPTTLAPDTSETSAAPTHQTITSVTTQTTTTKQPTSAPGQNKISRFL ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: CCDS35 QETTAAPITTPNSSPTTLAPDTSETSAAPTHQTTTSVTTQTTTTKQPTSAPGQNKISRFL 310 320 330 340 350 360 370 pF1KB8 LYMKNLLNRIIDDMVEQ ::::::::::::::::: CCDS35 LYMKNLLNRIIDDMVEQ 370 377 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:39:11 2016 done: Sun Nov 6 22:39:12 2016 Total Scan time: 3.560 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]