FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4361, 380 aa 1>>>pF1KE4361 380 - 380 aa - 380 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.1111+/-0.000959; mu= 5.3485+/- 0.057 mean_var=231.0341+/-46.890, 0's: 0 Z-trim(111.7): 116 B-trim: 0 in 0/53 Lambda= 0.084379 statistics sampled from 12504 (12621) to 12504 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.388), width: 16 Scan time: 2.870 The best scores are: opt bits E(32554) CCDS4730.1 NELFE gene_id:7936|Hs108|chr6 ( 380) 2537 321.7 7e-88 >>CCDS4730.1 NELFE gene_id:7936|Hs108|chr6 (380 aa) initn: 2537 init1: 2537 opt: 2537 Z-score: 1691.3 bits: 321.7 E(32554): 7e-88 Smith-Waterman score: 2537; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380) 10 20 30 40 50 60 pF1KE4 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTAT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 QESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 SPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 SPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 DREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 DREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 TYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 TYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRD 310 320 330 340 350 360 370 380 pF1KE4 KRTQIVYSDDVYKENLVDGF :::::::::::::::::::: CCDS47 KRTQIVYSDDVYKENLVDGF 370 380 380 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 06:32:42 2016 done: Thu Nov 3 06:32:42 2016 Total Scan time: 2.870 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]