FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1344, 560 aa 1>>>pF1KE1344 560 - 560 aa - 560 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6145+/-0.000916; mu= 13.1252+/- 0.056 mean_var=94.4997+/-18.495, 0's: 0 Z-trim(108.3): 19 B-trim: 39 in 1/50 Lambda= 0.131935 statistics sampled from 10091 (10099) to 10091 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.31), width: 16 Scan time: 3.030 The best scores are: opt bits E(32554) CCDS11365.1 CDC6 gene_id:990|Hs108|chr17 ( 560) 3658 706.6 2e-203 CCDS566.1 ORC1 gene_id:4998|Hs108|chr1 ( 861) 516 108.6 3.2e-23 >>CCDS11365.1 CDC6 gene_id:990|Hs108|chr17 (560 aa) initn: 3658 init1: 3658 opt: 3658 Z-score: 3765.5 bits: 706.6 E(32554): 2e-203 Smith-Waterman score: 3658; 99.8% identity (100.0% similar) in 560 aa overlap (1-560:1-560) 10 20 30 40 50 60 pF1KE1 MPQTRSQAQATISFPKRKLSRALNKAKNSSDAKLEPTNVQTVTCSPRVKALPLSPRKRLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MPQTRSQAQATISFPKRKLSRALNKAKNSSDAKLEPTNVQTVTCSPRVKALPLSPRKRLG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DDNLCNTPHLPPCSPPKQGKKENGPPHSHTLKGRRLVFDNQLTIKSPSKRELAKVHQNKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 DDNLCNTPHLPPCSPPKQGKKENGPPHSHTLKGRRLVFDNQLTIKSPSKRELAKVHQNKI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LSSVRKSQEITTNSEQRCPLKKESACVRLFKQEGTCYQQAKLVLNTAVPDRLPAREREMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LSSVRKSQEITTNSEQRCPLKKESACVRLFKQEGTCYQQAKLVLNTAVPDRLPAREREMD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 VIRNFLREHICGKKAGSLYLSGAPGTGKTACLSRILQDLKKELKGFKTIMLNCMSLRTAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 VIRNFLREHICGKKAGSLYLSGAPGTGKTACLSRILQDLKKELKGFKTIMLNCMSLRTAQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 AVFPAIAQEICQEEVSRPAGKDMMRKLEKHMTAEKGPMIVLVLDEMDQLDSKGQDVLYTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 AVFPAIAQEICQEEVSRPAGKDMMRKLEKHMTAEKGPMIVLVLDEMDQLDSKGQDVLYTL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 FEWPWLSNSHLVLIGIANTLDLTDRILPRLQAREKCKPQLLNFPPYTRNQIVTILQDRLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 FEWPWLSNSHLVLIGIANTLDLTDRILPRLQAREKCKPQLLNFPPYTRNQIVTILQDRLN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 QVSRDQVLDNAAVQFCARKVSAVSGDVRKALDVCRRAIEIVESDVKSQTILKPLSECKSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QVSRDQVLDNAAVQFCARKVSAVSGDVRKALDVCRRAIEIVESDVKSQTILKPLSECKSP 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 SEPLIPKRVGLIHISQVISEIDGNRMTLSQEGAQDSFPLQQKILVCSLMLLIRQLKIKEV ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: CCDS11 SEPLIPKRVGLIHISQVISEVDGNRMTLSQEGAQDSFPLQQKILVCSLMLLIRQLKIKEV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 TLGKLYEAYSKVCRKQQVAAVDQSECLSLSGLLEARGILGLKRNKETRLTKVFFKIEEKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TLGKLYEAYSKVCRKQQVAAVDQSECLSLSGLLEARGILGLKRNKETRLTKVFFKIEEKE 490 500 510 520 530 540 550 560 pF1KE1 IEHALKDKALIGNILATGLP :::::::::::::::::::: CCDS11 IEHALKDKALIGNILATGLP 550 560 >>CCDS566.1 ORC1 gene_id:4998|Hs108|chr1 (861 aa) initn: 353 init1: 167 opt: 516 Z-score: 530.4 bits: 108.6 E(32554): 3.2e-23 Smith-Waterman score: 603; 28.1% identity (62.3% similar) in 467 aa overlap (99-548:422-861) 70 80 90 100 110 120 pF1KE1 HLPPCSPPKQGKKENGPPHSHTLKGRRLVFDNQLTIKSPSKRELAKVHQNKILSSVRKSQ :.. . : :. .. . .. ::...: CCDS56 RQQLRFLGNSKSDQEEKEILPAAEISDSSSDEEEASTPPLPRRAPRTVSRNLRSSLKSSL 400 410 420 430 440 450 130 140 150 160 170 pF1KE1 EITTNSEQRCPLKKESAC----VR---LFKQE-GTCYQQAKLVLN-TAVPDRLPAREREM . :. .. . : .: : :: .. ..:.: :. .:::. :: ::.:. CCDS56 HTLTKVPKKSLKPRTPRCAAPQIRSRSLAAQEPASVLEEARLRLHVSAVPESLPCREQEF 460 470 480 490 500 510 180 190 200 210 220 230 pF1KE1 DVIRNFLREHICGKKAGSLYLSGAPGTGKTACLSRILQDLKK-----ELKGFKTIMLNCM . : ::.. .. . .: .:.::.::::::: . .... :.. .. :. : .: : CCDS56 QDIYNFVESKLLDHTGGCMYISGVPGTGKTATVHEVIRCLQQAAQANDVPPFQYIEVNGM 520 530 540 550 560 570 240 250 260 270 280 290 pF1KE1 SLRTAQAVFPAIAQEICQEEVSRPAGKDMMRKLEKHMTAEKGPM--IVLVLDEMDQLDSK .: . :. : :.. .... . .. : :.. .. .:. ::..::.: : .. CCDS56 KLTEPHQVYVQILQKLTGQKATANHAAEL---LAKQFCTRGSPQETTVLLVDELDLLWTH 580 590 600 610 620 300 310 320 330 340 350 pF1KE1 GQDVLYTLFEWPWLSNSHLVLIGIANTLDLTDRIL-PRLQAREKCKPQLLNFPPYTRNQI ::..:.::.:: ....::...::::.:: .::. :...: . : ::: .:. CCDS56 KQDIMYNLFDWPTHKEARLVVLAIANTMDLPERIMMNRVSSRLGLTR--MCFQPYTYSQL 630 640 650 660 670 680 360 370 380 390 400 410 pF1KE1 VTILQDRLNQVSRDQVLDNAAVQFCARKVSAVSGDVRKALDVCRRAIEIVESDVKSQTIL ::..::... ..... :.:. ::::.:.:::.:. ::.:::: :: : :: CCDS56 QQILRSRLKHL---KAFEDDAIQLVARKVAALSGDARRCLDICRRATEICEF---SQ--- 690 700 710 720 730 420 430 440 450 460 470 pF1KE1 KPLSECKSPSEPLIPKRVGLIHISQVISEIDGNRMTLSQEGAQDSFPLQQKILVCSLMLL ..:. : ::. :.. . .: . . ..: :.:..: ... CCDS56 ------QKPDSP------GLVTIAHSMEAVDEMFSSSYITAIKNSSVLEQSFLR-AILAE 740 750 760 770 780 480 490 500 510 520 530 pF1KE1 IRQLKIKEVTLGKLYEAYSKVCRKQQVAAVDQSECLSLSGLLEARGILGLKRNKETRLTK .:. ..:.:. ..: . .:: . . .:: ... . : . .: .. ... : . CCDS56 FRRSGLEEATFQQIYSQHVALCRMEGLPYPTMSETMAVCSHLGSCRLLLVEPSRNDLLLR 790 800 810 820 830 840 540 550 560 pF1KE1 VFFKIEEKEIEHALKDKALIGNILATGLP : ... . .. .::::. CCDS56 VRLNVSQDDVLYALKDE 850 860 560 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:39:49 2016 done: Sun Nov 6 22:39:49 2016 Total Scan time: 3.030 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]