FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2572, 125 aa
  1>>>pF1KE2572 125 - 125 aa - 125 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1768+/-0.000395; mu= 9.8888+/- 0.024
 mean_var=44.0441+/- 9.071, 0's: 0 Z-trim(109.9): 30  B-trim: 0 in 0/53
 Lambda= 0.193255
 statistics sampled from 18160 (18170) to 18160 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.213), width:  16
 Scan time:  4.250

The best scores are:                                      opt bits E(85289)
NP_054736 (OMIM: 610389,610798) ragulator complex  ( 125)  790 227.5 4.3e-60
NP_001138736 (OMIM: 610389,610798) ragulator compl (  95)  496 145.6 1.5e-35


>>NP_054736 (OMIM: 610389,610798) ragulator complex prot  (125 aa)
 initn: 790 init1: 790 opt: 790  Z-score: 1199.9  bits: 227.5 E(85289): 4.3e-60
Smith-Waterman score: 790; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE2 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 NQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLT
               70        80        90       100       110       120

            
pF1KE2 QVAAS
       :::::
NP_054 QVAAS
            

>>NP_001138736 (OMIM: 610389,610798) ragulator complex p  (95 aa)
 initn: 496 init1: 496 opt: 496  Z-score: 759.0  bits: 145.6 E(85289): 1.5e-35
Smith-Waterman score: 532; 76.0% identity (76.0% similar) in 125 aa overlap (1-125:1-95)

               10        20        30        40        50        60
pF1KE2 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 NQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLT
       :::::::::::::::::                              :::::::::::::
NP_001 NQAFNEDNLKFILMDCM------------------------------AQALVQYLEEPLT
               70                                      80        90

            
pF1KE2 QVAAS
       :::::
NP_001 QVAAS
            




125 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:05:19 2016 done: Sat Nov  5 06:05:19 2016
 Total Scan time:  4.250 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]