FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2572, 125 aa 1>>>pF1KE2572 125 - 125 aa - 125 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4204+/-0.000899; mu= 8.5014+/- 0.054 mean_var=46.6206+/- 9.340, 0's: 0 Z-trim(102.9): 22 B-trim: 0 in 0/48 Lambda= 0.187839 statistics sampled from 7177 (7182) to 7177 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.221), width: 16 Scan time: 1.530 The best scores are: opt bits E(32554) CCDS1128.1 LAMTOR2 gene_id:28956|Hs108|chr1 ( 125) 790 221.6 9.7e-59 CCDS44243.1 LAMTOR2 gene_id:28956|Hs108|chr1 ( 95) 496 142.0 7.1e-35 >>CCDS1128.1 LAMTOR2 gene_id:28956|Hs108|chr1 (125 aa) initn: 790 init1: 790 opt: 790 Z-score: 1168.0 bits: 221.6 E(32554): 9.7e-59 Smith-Waterman score: 790; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125) 10 20 30 40 50 60 pF1KE2 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 NQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 NQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLT 70 80 90 100 110 120 pF1KE2 QVAAS ::::: CCDS11 QVAAS >>CCDS44243.1 LAMTOR2 gene_id:28956|Hs108|chr1 (95 aa) initn: 496 init1: 496 opt: 496 Z-score: 739.6 bits: 142.0 E(32554): 7.1e-35 Smith-Waterman score: 532; 76.0% identity (76.0% similar) in 125 aa overlap (1-125:1-95) 10 20 30 40 50 60 pF1KE2 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 NQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLT ::::::::::::::::: ::::::::::::: CCDS44 NQAFNEDNLKFILMDCM------------------------------AQALVQYLEEPLT 70 80 90 pF1KE2 QVAAS ::::: CCDS44 QVAAS 125 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 06:05:18 2016 done: Sat Nov 5 06:05:19 2016 Total Scan time: 1.530 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]