FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5118, 145 aa
  1>>>pF1KE5118 145 - 145 aa - 145 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7983+/-0.000286; mu= 14.2380+/- 0.018
 mean_var=59.2368+/-11.819, 0's: 0 Z-trim(118.2): 14  B-trim: 1129 in 1/55
 Lambda= 0.166640
 statistics sampled from 31000 (31014) to 31000 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.364), width:  16
 Scan time:  3.970

The best scores are:                                      opt bits E(85289)
NP_006424 (OMIM: 188855) granulysin isoform 2 prec ( 145)  984 244.1 6.1e-65
NP_036615 (OMIM: 188855) granulysin isoform 3 [Hom ( 130)  875 217.8 4.3e-57
NP_001289687 (OMIM: 188855) granulysin isoform 1 p ( 172)  875 217.9 5.4e-57
XP_005264142 (OMIM: 188855) PREDICTED: granulysin  ( 174)  570 144.6 6.5e-35
XP_005264144 (OMIM: 188855) PREDICTED: granulysin  ( 159)  461 118.3 4.7e-27
XP_005264141 (OMIM: 188855) PREDICTED: granulysin  ( 201)  461 118.4 5.6e-27


>>NP_006424 (OMIM: 188855) granulysin isoform 2 precurso  (145 aa)
 initn: 984 init1: 984 opt: 984  Z-score: 1286.9  bits: 244.1 E(85289): 6.1e-65
Smith-Waterman score: 984; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KE5 MATWALLLLAAMLLGNPGLVFSRLSPEYYDLARAHLRDEEKSCPCLAQEGPQGDLLTKTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MATWALLLLAAMLLGNPGLVFSRLSPEYYDLARAHLRDEEKSCPCLAQEGPQGDLLTKTQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVTQ
               70        80        90       100       110       120

              130       140     
pF1KE5 GLVAGETAQQICEDLRLCIPSTGPL
       :::::::::::::::::::::::::
NP_006 GLVAGETAQQICEDLRLCIPSTGPL
              130       140     

>>NP_036615 (OMIM: 188855) granulysin isoform 3 [Homo sa  (130 aa)
 initn: 875 init1: 875 opt: 875  Z-score: 1145.9  bits: 217.8 E(85289): 4.3e-57
Smith-Waterman score: 875; 100.0% identity (100.0% similar) in 128 aa overlap (18-145:3-130)

               10        20        30        40        50        60
pF1KE5 MATWALLLLAAMLLGNPGLVFSRLSPEYYDLARAHLRDEEKSCPCLAQEGPQGDLLTKTQ
                        :::::::::::::::::::::::::::::::::::::::::::
NP_036                MEGLVFSRLSPEYYDLARAHLRDEEKSCPCLAQEGPQGDLLTKTQ
                              10        20        30        40     

               70        80        90       100       110       120
pF1KE5 ELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVTQ
          50        60        70        80        90       100     

              130       140     
pF1KE5 GLVAGETAQQICEDLRLCIPSTGPL
       :::::::::::::::::::::::::
NP_036 GLVAGETAQQICEDLRLCIPSTGPL
         110       120       130

>>NP_001289687 (OMIM: 188855) granulysin isoform 1 precu  (172 aa)
 initn: 875 init1: 875 opt: 875  Z-score: 1144.2  bits: 217.9 E(85289): 5.4e-57
Smith-Waterman score: 920; 84.3% identity (84.3% similar) in 172 aa overlap (1-145:1-172)

               10                                   20        30   
pF1KE5 MATWALLLLAAMLLGNPGL---------------------------VFSRLSPEYYDLAR
       :::::::::::::::::::                           ::::::::::::::
NP_001 MATWALLLLAAMLLGNPGLEVSVSPKGKNTSGRESGFGWAIWMEGLVFSRLSPEYYDLAR
               10        20        30        40        50        60

            40        50        60        70        80        90   
pF1KE5 AHLRDEEKSCPCLAQEGPQGDLLTKTQELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AHLRDEEKSCPCLAQEGPQGDLLTKTQELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAAT
               70        80        90       100       110       120

           100       110       120       130       140     
pF1KE5 RVCRTGRSRWRDVCRNFMRRYQSRVTQGLVAGETAQQICEDLRLCIPSTGPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVCRTGRSRWRDVCRNFMRRYQSRVTQGLVAGETAQQICEDLRLCIPSTGPL
              130       140       150       160       170  

>>XP_005264142 (OMIM: 188855) PREDICTED: granulysin isof  (174 aa)
 initn: 570 init1: 570 opt: 570  Z-score: 747.8  bits: 144.6 E(85289): 6.5e-35
Smith-Waterman score: 570; 100.0% identity (100.0% similar) in 85 aa overlap (1-85:1-85)

               10        20        30        40        50        60
pF1KE5 MATWALLLLAAMLLGNPGLVFSRLSPEYYDLARAHLRDEEKSCPCLAQEGPQGDLLTKTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MATWALLLLAAMLLGNPGLVFSRLSPEYYDLARAHLRDEEKSCPCLAQEGPQGDLLTKTQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVTQ
       :::::::::::::::::::::::::                                   
XP_005 ELGRDYRTCLTIVQKLKKMVDKPTQVPSEPSHLVLWKKHRLLSSDPGNLSNLCRLLASSI
               70        80        90       100       110       120

>>XP_005264144 (OMIM: 188855) PREDICTED: granulysin isof  (159 aa)
 initn: 461 init1: 461 opt: 461  Z-score: 606.8  bits: 118.3 E(85289): 4.7e-27
Smith-Waterman score: 461; 100.0% identity (100.0% similar) in 68 aa overlap (18-85:3-70)

               10        20        30        40        50        60
pF1KE5 MATWALLLLAAMLLGNPGLVFSRLSPEYYDLARAHLRDEEKSCPCLAQEGPQGDLLTKTQ
                        :::::::::::::::::::::::::::::::::::::::::::
XP_005                MEGLVFSRLSPEYYDLARAHLRDEEKSCPCLAQEGPQGDLLTKTQ
                              10        20        30        40     

               70        80        90       100       110       120
pF1KE5 ELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVTQ
       :::::::::::::::::::::::::                                   
XP_005 ELGRDYRTCLTIVQKLKKMVDKPTQVPSEPSHLVLWKKHRLLSSDPGNLSNLCRLLASSI
          50        60        70        80        90       100     

>>XP_005264141 (OMIM: 188855) PREDICTED: granulysin isof  (201 aa)
 initn: 461 init1: 461 opt: 461  Z-score: 605.3  bits: 118.4 E(85289): 5.6e-27
Smith-Waterman score: 506; 75.9% identity (75.9% similar) in 112 aa overlap (1-85:1-112)

               10                                   20        30   
pF1KE5 MATWALLLLAAMLLGNPGL---------------------------VFSRLSPEYYDLAR
       :::::::::::::::::::                           ::::::::::::::
XP_005 MATWALLLLAAMLLGNPGLEVSVSPKGKNTSGRESGFGWAIWMEGLVFSRLSPEYYDLAR
               10        20        30        40        50        60

            40        50        60        70        80        90   
pF1KE5 AHLRDEEKSCPCLAQEGPQGDLLTKTQELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
XP_005 AHLRDEEKSCPCLAQEGPQGDLLTKTQELGRDYRTCLTIVQKLKKMVDKPTQVPSEPSHL
               70        80        90       100       110       120

           100       110       120       130       140             
pF1KE5 RVCRTGRSRWRDVCRNFMRRYQSRVTQGLVAGETAQQICEDLRLCIPSTGPL        
                                                                   
XP_005 VLWKKHRLLSSDPGNLSNLCRLLASSIQNPLSSLPPLTPSAVLPSHENKVSSKILAAAAS
              130       140       150       160       170       180




145 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:34:53 2016 done: Mon Nov  7 21:34:54 2016
 Total Scan time:  3.970 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]