FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5118, 145 aa
  1>>>pF1KE5118 145 - 145 aa - 145 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9720+/-0.000589; mu= 13.4125+/- 0.035
 mean_var=60.7876+/-11.907, 0's: 0 Z-trim(111.8): 7  B-trim: 13 in 1/51
 Lambda= 0.164500
 statistics sampled from 12693 (12699) to 12693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.39), width:  16
 Scan time:  1.540

The best scores are:                                      opt bits E(32554)
CCDS1984.1 GNLY gene_id:10578|Hs108|chr2           ( 145)  984 241.0 1.9e-64
CCDS46354.1 GNLY gene_id:10578|Hs108|chr2          ( 130)  875 215.1 1.1e-56
CCDS77430.1 GNLY gene_id:10578|Hs108|chr2          ( 172)  875 215.2 1.3e-56


>>CCDS1984.1 GNLY gene_id:10578|Hs108|chr2                (145 aa)
 initn: 984 init1: 984 opt: 984  Z-score: 1270.5  bits: 241.0 E(32554): 1.9e-64
Smith-Waterman score: 984; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KE5 MATWALLLLAAMLLGNPGLVFSRLSPEYYDLARAHLRDEEKSCPCLAQEGPQGDLLTKTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MATWALLLLAAMLLGNPGLVFSRLSPEYYDLARAHLRDEEKSCPCLAQEGPQGDLLTKTQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 ELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVTQ
               70        80        90       100       110       120

              130       140     
pF1KE5 GLVAGETAQQICEDLRLCIPSTGPL
       :::::::::::::::::::::::::
CCDS19 GLVAGETAQQICEDLRLCIPSTGPL
              130       140     

>>CCDS46354.1 GNLY gene_id:10578|Hs108|chr2               (130 aa)
 initn: 875 init1: 875 opt: 875  Z-score: 1131.4  bits: 215.1 E(32554): 1.1e-56
Smith-Waterman score: 875; 100.0% identity (100.0% similar) in 128 aa overlap (18-145:3-130)

               10        20        30        40        50        60
pF1KE5 MATWALLLLAAMLLGNPGLVFSRLSPEYYDLARAHLRDEEKSCPCLAQEGPQGDLLTKTQ
                        :::::::::::::::::::::::::::::::::::::::::::
CCDS46                MEGLVFSRLSPEYYDLARAHLRDEEKSCPCLAQEGPQGDLLTKTQ
                              10        20        30        40     

               70        80        90       100       110       120
pF1KE5 ELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVTQ
          50        60        70        80        90       100     

              130       140     
pF1KE5 GLVAGETAQQICEDLRLCIPSTGPL
       :::::::::::::::::::::::::
CCDS46 GLVAGETAQQICEDLRLCIPSTGPL
         110       120       130

>>CCDS77430.1 GNLY gene_id:10578|Hs108|chr2               (172 aa)
 initn: 875 init1: 875 opt: 875  Z-score: 1129.6  bits: 215.2 E(32554): 1.3e-56
Smith-Waterman score: 920; 84.3% identity (84.3% similar) in 172 aa overlap (1-145:1-172)

               10                                   20        30   
pF1KE5 MATWALLLLAAMLLGNPGL---------------------------VFSRLSPEYYDLAR
       :::::::::::::::::::                           ::::::::::::::
CCDS77 MATWALLLLAAMLLGNPGLEVSVSPKGKNTSGRESGFGWAIWMEGLVFSRLSPEYYDLAR
               10        20        30        40        50        60

            40        50        60        70        80        90   
pF1KE5 AHLRDEEKSCPCLAQEGPQGDLLTKTQELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AHLRDEEKSCPCLAQEGPQGDLLTKTQELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAAT
               70        80        90       100       110       120

           100       110       120       130       140     
pF1KE5 RVCRTGRSRWRDVCRNFMRRYQSRVTQGLVAGETAQQICEDLRLCIPSTGPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 RVCRTGRSRWRDVCRNFMRRYQSRVTQGLVAGETAQQICEDLRLCIPSTGPL
              130       140       150       160       170  




145 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:34:53 2016 done: Mon Nov  7 21:34:53 2016
 Total Scan time:  1.540 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]