FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5124, 84 aa
  1>>>pF1KE5124 84 - 84 aa - 84 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7035+/-0.000552; mu= 11.6579+/- 0.033
 mean_var=60.2086+/-11.957, 0's: 0 Z-trim(113.3): 51  B-trim: 115 in 2/49
 Lambda= 0.165289
 statistics sampled from 13919 (13970) to 13919 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.429), width:  16
 Scan time:  1.400

The best scores are:                                      opt bits E(32554)
CCDS3508.1 SPINK2 gene_id:6691|Hs108|chr4          (  84)  587 147.1 1.2e-36
CCDS63972.1 SPINK2 gene_id:6691|Hs108|chr4         ( 119)  490 124.0 1.5e-29
CCDS63971.1 SPINK2 gene_id:6691|Hs108|chr4         ( 134)  490 124.1 1.6e-29


>>CCDS3508.1 SPINK2 gene_id:6691|Hs108|chr4               (84 aa)
 initn: 587 init1: 587 opt: 587  Z-score: 771.2  bits: 147.1 E(32554): 1.2e-36
Smith-Waterman score: 587; 100.0% identity (100.0% similar) in 84 aa overlap (1-84:1-84)

               10        20        30        40        50        60
pF1KE5 MALSVLRLALLLLAVTFAASLIPQFGLFSKYRTPNCSQYRLPGCPRHFNPVCGSDMSTYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MALSVLRLALLLLAVTFAASLIPQFGLFSKYRTPNCSQYRLPGCPRHFNPVCGSDMSTYA
               10        20        30        40        50        60

               70        80    
pF1KE5 NECTLCMKIREGGHNIKIIRNGPC
       ::::::::::::::::::::::::
CCDS35 NECTLCMKIREGGHNIKIIRNGPC
               70        80    

>>CCDS63972.1 SPINK2 gene_id:6691|Hs108|chr4              (119 aa)
 initn: 578 init1: 490 opt: 490  Z-score: 644.1  bits: 124.0 E(32554): 1.5e-29
Smith-Waterman score: 490; 100.0% identity (100.0% similar) in 66 aa overlap (19-84:54-119)

                           10        20        30        40        
pF1KE5             MALSVLRLALLLLAVTFAASLIPQFGLFSKYRTPNCSQYRLPGCPRHF
                                     ::::::::::::::::::::::::::::::
CCDS63 GPGERGPPEKSGFGSQTGGGPCPAPGGLGDASLIPQFGLFSKYRTPNCSQYRLPGCPRHF
            30        40        50        60        70        80   

       50        60        70        80    
pF1KE5 NPVCGSDMSTYANECTLCMKIREGGHNIKIIRNGPC
       ::::::::::::::::::::::::::::::::::::
CCDS63 NPVCGSDMSTYANECTLCMKIREGGHNIKIIRNGPC
            90       100       110         

>>CCDS63971.1 SPINK2 gene_id:6691|Hs108|chr4              (134 aa)
 initn: 578 init1: 490 opt: 490  Z-score: 643.4  bits: 124.1 E(32554): 1.6e-29
Smith-Waterman score: 490; 100.0% identity (100.0% similar) in 66 aa overlap (19-84:69-134)

                           10        20        30        40        
pF1KE5             MALSVLRLALLLLAVTFAASLIPQFGLFSKYRTPNCSQYRLPGCPRHF
                                     ::::::::::::::::::::::::::::::
CCDS63 QTGGGPCPAPGGLGDGTRAPVTGGSPEDLPASLIPQFGLFSKYRTPNCSQYRLPGCPRHF
       40        50        60        70        80        90        

       50        60        70        80    
pF1KE5 NPVCGSDMSTYANECTLCMKIREGGHNIKIIRNGPC
       ::::::::::::::::::::::::::::::::::::
CCDS63 NPVCGSDMSTYANECTLCMKIREGGHNIKIIRNGPC
      100       110       120       130    




84 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:37:57 2016 done: Mon Nov  7 21:37:57 2016
 Total Scan time:  1.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]