Result of FASTA (omim) for
pFN21AE0131
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0131, 183 aa
1>>>pF1KE0131 183 - 183 aa - 183 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8878+/-0.00034; mu= 10.3121+/- 0.021
mean_var=74.8118+/-15.412, 0's: 0 Z-trim(116.2): 49 B-trim: 917 in 2/55
Lambda= 0.148282
statistics sampled from 27072 (27121) to 27072 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.318), width: 16
Scan time: 5.740
The best scores are: opt bits E(85289)
NP_149076 (OMIM: 300450) fetal and adult testis-ex ( 183) 1209 267.4 9.2e-72
XP_005246742 (OMIM: 614785,617086) PREDICTED: mito ( 289) 142 39.2 0.0071
NP_001263991 (OMIM: 614785,617086) mitochondrial f ( 291) 142 39.2 0.0071
XP_006712701 (OMIM: 614785,617086) PREDICTED: mito ( 291) 142 39.2 0.0071
XP_005246739 (OMIM: 614785,617086) PREDICTED: mito ( 317) 142 39.2 0.0077
XP_016860001 (OMIM: 614785,617086) PREDICTED: mito ( 317) 142 39.2 0.0077
XP_016860004 (OMIM: 614785,617086) PREDICTED: mito ( 243) 140 38.8 0.0082
NP_001263992 (OMIM: 614785,617086) mitochondrial f ( 243) 140 38.8 0.0082
XP_005246743 (OMIM: 614785,617086) PREDICTED: mito ( 269) 140 38.8 0.009
>>NP_149076 (OMIM: 300450) fetal and adult testis-expres (183 aa)
initn: 1209 init1: 1209 opt: 1209 Z-score: 1409.3 bits: 267.4 E(85289): 9.2e-72
Smith-Waterman score: 1209; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)
10 20 30 40 50 60
pF1KE0 MAGGPPNTKAEMEMSLAEELNHGRQGENQEHLVIAEMMELGSRSRGASQKKQKLEQKAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MAGGPPNTKAEMEMSLAEELNHGRQGENQEHLVIAEMMELGSRSRGASQKKQKLEQKAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 SASAKRVWNMTATRPKKMGSQLPKPRMLRESGHGDAHLQEYAGNFQGIRFHYDRNPGTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 SASAKRVWNMTATRPKKMGSQLPKPRMLRESGHGDAHLQEYAGNFQGIRFHYDRNPGTDA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VAQTSLEEFNVLEMEVMRRQLYAVNRRLRALEEQGATWRHRETLIIAVLVSASIANLWLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 VAQTSLEEFNVLEMEVMRRQLYAVNRRLRALEEQGATWRHRETLIIAVLVSASIANLWLW
130 140 150 160 170 180
pF1KE0 MNQ
:::
NP_149 MNQ
>>XP_005246742 (OMIM: 614785,617086) PREDICTED: mitochon (289 aa)
initn: 165 init1: 133 opt: 142 Z-score: 172.6 bits: 39.2 E(85289): 0.0071
Smith-Waterman score: 142; 20.9% identity (56.1% similar) in 148 aa overlap (36-180:143-286)
10 20 30 40 50 60
pF1KE0 PNTKAEMEMSLAEELNHGRQGENQEHLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAK
:. .: .: :.... ..:.. .
XP_005 LKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVRQNGQ-LVRND
120 130 140 150 160 170
70 80 90 100 110 120
pF1KE0 RVWNMTATRPKKMGSQLPKPRMLRESG---HGDAHLQEYAGNFQGIRFHYDRNPGTDAVA
.:. . . :.. :.. : : .: . . ...:. . . :..
XP_005 SLWHRSDSAPRNKISRFQAPISAPEYTPVLRGGSAAATSNPHHDNVRYGIS---NIDTTI
180 190 200 210 220
130 140 150 160 170 180
pF1KE0 QTSLEEFNVLEMEVMRRQLYAVNRRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMN
. . ....:.. .:::. .::::. :::.. .:: .. .. :. . : :::
XP_005 EGTSDDLTVVDAASLRRQIIKLNRRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFR
230 240 250 260 270 280
pF1KE0 Q
XP_005 R
>>NP_001263991 (OMIM: 614785,617086) mitochondrial fissi (291 aa)
initn: 149 init1: 133 opt: 142 Z-score: 172.6 bits: 39.2 E(85289): 0.0071
Smith-Waterman score: 142; 22.2% identity (55.7% similar) in 185 aa overlap (5-180:109-288)
10 20 30
pF1KE0 MAGGPPNTKAEMEMSLAEELNHGRQ-GEN---QE
::.: . :. . .:.. :. .:: :.
NP_001 STPFKPLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVRQN
80 90 100 110 120 130
40 50 60 70 80
pF1KE0 -HLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ----LPKP
.:: . . : ... . : . .:. .::. . .. . .. .: : .
NP_001 GQLVRNDSLVTPSPQQARVCPPHMLPEDGANLSSARGILSLIQSSTRRAYQQILDVLDEN
140 150 160 170 180 190
90 100 110 120 130 140
pF1KE0 RMLRESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRRQLYAVN
: : .: . . ...:. . . :.. . . ....:.. .:::. .:
NP_001 R--RPVLRGGSAAATSNPHHDNVRYGIS---NIDTTIEGTSDDLTVVDAASLRRQIIKLN
200 210 220 230 240 250
150 160 170 180
pF1KE0 RRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
:::. :::.. .:: .. .. :. . : :::
NP_001 RRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
260 270 280 290
>>XP_006712701 (OMIM: 614785,617086) PREDICTED: mitochon (291 aa)
initn: 149 init1: 133 opt: 142 Z-score: 172.6 bits: 39.2 E(85289): 0.0071
Smith-Waterman score: 142; 22.2% identity (55.7% similar) in 185 aa overlap (5-180:109-288)
10 20 30
pF1KE0 MAGGPPNTKAEMEMSLAEELNHGRQ-GEN---QE
::.: . :. . .:.. :. .:: :.
XP_006 STPFKPLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVRQN
80 90 100 110 120 130
40 50 60 70 80
pF1KE0 -HLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ----LPKP
.:: . . : ... . : . .:. .::. . .. . .. .: : .
XP_006 GQLVRNDSLVTPSPQQARVCPPHMLPEDGANLSSARGILSLIQSSTRRAYQQILDVLDEN
140 150 160 170 180 190
90 100 110 120 130 140
pF1KE0 RMLRESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRRQLYAVN
: : .: . . ...:. . . :.. . . ....:.. .:::. .:
XP_006 R--RPVLRGGSAAATSNPHHDNVRYGIS---NIDTTIEGTSDDLTVVDAASLRRQIIKLN
200 210 220 230 240 250
150 160 170 180
pF1KE0 RRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
:::. :::.. .:: .. .. :. . : :::
XP_006 RRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
260 270 280 290
>>XP_005246739 (OMIM: 614785,617086) PREDICTED: mitochon (317 aa)
initn: 133 init1: 133 opt: 142 Z-score: 172.0 bits: 39.2 E(85289): 0.0077
Smith-Waterman score: 142; 22.2% identity (55.7% similar) in 185 aa overlap (5-180:135-314)
10 20 30
pF1KE0 MAGGPPNTKAEMEMSLAEELNHGRQ-GEN---QE
::.: . :. . .:.. :. .:: :.
XP_005 STPFKPLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVRQN
110 120 130 140 150 160
40 50 60 70 80
pF1KE0 -HLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ----LPKP
.:: . . : ... . : . .:. .::. . .. . .. .: : .
XP_005 GQLVRNDSLVTPSPQQARVCPPHMLPEDGANLSSARGILSLIQSSTRRAYQQILDVLDEN
170 180 190 200 210 220
90 100 110 120 130 140
pF1KE0 RMLRESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRRQLYAVN
: : .: . . ...:. . . :.. . . ....:.. .:::. .:
XP_005 R--RPVLRGGSAAATSNPHHDNVRYGIS---NIDTTIEGTSDDLTVVDAASLRRQIIKLN
230 240 250 260 270
150 160 170 180
pF1KE0 RRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
:::. :::.. .:: .. .. :. . : :::
XP_005 RRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
280 290 300 310
>>XP_016860001 (OMIM: 614785,617086) PREDICTED: mitochon (317 aa)
initn: 133 init1: 133 opt: 142 Z-score: 172.0 bits: 39.2 E(85289): 0.0077
Smith-Waterman score: 142; 22.2% identity (55.7% similar) in 185 aa overlap (5-180:135-314)
10 20 30
pF1KE0 MAGGPPNTKAEMEMSLAEELNHGRQ-GEN---QE
::.: . :. . .:.. :. .:: :.
XP_016 STPFKPLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVRQN
110 120 130 140 150 160
40 50 60 70 80
pF1KE0 -HLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ----LPKP
.:: . . : ... . : . .:. .::. . .. . .. .: : .
XP_016 GQLVRNDSLVTPSPQQARVCPPHMLPEDGANLSSARGILSLIQSSTRRAYQQILDVLDEN
170 180 190 200 210 220
90 100 110 120 130 140
pF1KE0 RMLRESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRRQLYAVN
: : .: . . ...:. . . :.. . . ....:.. .:::. .:
XP_016 R--RPVLRGGSAAATSNPHHDNVRYGIS---NIDTTIEGTSDDLTVVDAASLRRQIIKLN
230 240 250 260 270
150 160 170 180
pF1KE0 RRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
:::. :::.. .:: .. .. :. . : :::
XP_016 RRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
280 290 300 310
>>XP_016860004 (OMIM: 614785,617086) PREDICTED: mitochon (243 aa)
initn: 164 init1: 133 opt: 140 Z-score: 171.5 bits: 38.8 E(85289): 0.0082
Smith-Waterman score: 140; 23.7% identity (61.8% similar) in 131 aa overlap (52-180:114-240)
30 40 50 60 70 80
pF1KE0 HGRQGENQEHLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ
:. : .:.: . .: . .:.: ...:
XP_016 PLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVR---QNGQ
90 100 110 120 130 140
90 100 110 120 130
pF1KE0 LPKPRML--RESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRR
: . : : .. ..... . ... .. : . . :.. . . ....:.. .::
XP_016 LVRNDSLWHRSDSAPRNKISRFQAPISAPEYTYGIS-NIDTTIEGTSDDLTVVDAASLRR
150 160 170 180 190
140 150 160 170 180
pF1KE0 QLYAVNRRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
:. .::::. :::.. .:: .. .. :. . : :::
XP_016 QIIKLNRRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
200 210 220 230 240
>>NP_001263992 (OMIM: 614785,617086) mitochondrial fissi (243 aa)
initn: 164 init1: 133 opt: 140 Z-score: 171.5 bits: 38.8 E(85289): 0.0082
Smith-Waterman score: 140; 23.7% identity (61.8% similar) in 131 aa overlap (52-180:114-240)
30 40 50 60 70 80
pF1KE0 HGRQGENQEHLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ
:. : .:.: . .: . .:.: ...:
NP_001 PLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVR---QNGQ
90 100 110 120 130 140
90 100 110 120 130
pF1KE0 LPKPRML--RESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRR
: . : : .. ..... . ... .. : . . :.. . . ....:.. .::
NP_001 LVRNDSLWHRSDSAPRNKISRFQAPISAPEYTYGIS-NIDTTIEGTSDDLTVVDAASLRR
150 160 170 180 190
140 150 160 170 180
pF1KE0 QLYAVNRRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
:. .::::. :::.. .:: .. .. :. . : :::
NP_001 QIIKLNRRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
200 210 220 230 240
>>XP_005246743 (OMIM: 614785,617086) PREDICTED: mitochon (269 aa)
initn: 149 init1: 133 opt: 140 Z-score: 170.8 bits: 38.8 E(85289): 0.009
Smith-Waterman score: 140; 23.7% identity (61.8% similar) in 131 aa overlap (52-180:140-266)
30 40 50 60 70 80
pF1KE0 HGRQGENQEHLVIAEMMELGSRSRGASQKKQKLEQKAAGSASAKRVWNMTATRPKKMGSQ
:. : .:.: . .: . .:.: ...:
XP_005 PLALKTPPRVLTLSERPLDFLDLERPPTTPQNEEIRAVGRLKRERSMSENAVR---QNGQ
110 120 130 140 150 160
90 100 110 120 130
pF1KE0 LPKPRML--RESGHGDAHLQEYAGNFQGIRFHYDRNPGTDAVAQTSLEEFNVLEMEVMRR
: . : : .. ..... . ... .. : . . :.. . . ....:.. .::
XP_005 LVRNDSLWHRSDSAPRNKISRFQAPISAPEYTYGIS-NIDTTIEGTSDDLTVVDAASLRR
170 180 190 200 210 220
140 150 160 170 180
pF1KE0 QLYAVNRRLRALEEQGATWRHRETLIIAVLVSASIANLWLWMNQ
:. .::::. :::.. .:: .. .. :. . : :::
XP_005 QIIKLNRRLQLLEEENKERAKREMVMYSITVAFWLLNSWLWFRR
230 240 250 260
183 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:27:58 2016 done: Fri Nov 4 01:27:58 2016
Total Scan time: 5.740 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]