FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3925, 223 aa 1>>>pF1KE3925 223 - 223 aa - 223 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8389+/-0.000704; mu= 12.0966+/- 0.042 mean_var=84.1218+/-16.678, 0's: 0 Z-trim(111.6): 38 B-trim: 0 in 0/51 Lambda= 0.139836 statistics sampled from 12485 (12523) to 12485 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.385), width: 16 Scan time: 2.420 The best scores are: opt bits E(32554) CCDS32465.1 LRRC29 gene_id:26231|Hs108|chr16 ( 223) 1491 309.8 8.9e-85 >>CCDS32465.1 LRRC29 gene_id:26231|Hs108|chr16 (223 aa) initn: 1491 init1: 1491 opt: 1491 Z-score: 1635.5 bits: 309.8 E(32554): 8.9e-85 Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223) 10 20 30 40 50 60 pF1KE3 MYSSGWPAGAAEPRHGRGRELAQALGCMHGAPSQLASLSLAHCSSLKSRPELEHQASGTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MYSSGWPAGAAEPRHGRGRELAQALGCMHGAPSQLASLSLAHCSSLKSRPELEHQASGTK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DACPEPQGPSLLTLRALQELDLTACSKLTDASLAKVLQFLQLRQLSLSLLPELTDNGLVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 DACPEPQGPSLLTLRALQELDLTACSKLTDASLAKVLQFLQLRQLSLSLLPELTDNGLVA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VARGCPSLEHLALSHCSRLSDKGWAQAASSWPRLQHLNLSSCSQLIEQTLDAIGQACRQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 VARGCPSLEHLALSHCSRLSDKGWAQAASSWPRLQHLNLSSCSQLIEQTLDAIGQACRQL 130 140 150 160 170 180 190 200 210 220 pF1KE3 RVLDVATCPGINMAAVRRFQAQLPQVSCVQSRFVGGADLTLTL ::::::::::::::::::::::::::::::::::::::::::: CCDS32 RVLDVATCPGINMAAVRRFQAQLPQVSCVQSRFVGGADLTLTL 190 200 210 220 223 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:53:24 2016 done: Sun Nov 6 08:53:24 2016 Total Scan time: 2.420 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]