FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1420, 209 aa 1>>>pF1KE1420 209 - 209 aa - 209 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.8702+/-0.000322; mu= -5.3369+/- 0.020 mean_var=278.8373+/-57.318, 0's: 0 Z-trim(125.4): 47 B-trim: 840 in 1/61 Lambda= 0.076807 statistics sampled from 48996 (49056) to 48996 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.855), E-opt: 0.2 (0.575), width: 16 Scan time: 7.380 The best scores are: opt bits E(85289) NP_061986 (OMIM: 609436) fibroblast growth factor ( 209) 1445 171.9 6.6e-43 NP_005108 (OMIM: 603891) fibroblast growth factor ( 216) 371 52.9 4.5e-07 NP_065689 (OMIM: 193100,605380) fibroblast growth ( 251) 312 46.4 4.7e-05 >>NP_061986 (OMIM: 609436) fibroblast growth factor 21 p (209 aa) initn: 1445 init1: 1445 opt: 1445 Z-score: 891.3 bits: 171.9 E(85289): 6.6e-43 Smith-Waterman score: 1445; 99.5% identity (99.5% similar) in 209 aa overlap (1-209:1-209) 10 20 30 40 50 60 pF1KE1 MDSDETGFEHSGLWVSVLAGLLLGACQAHPIPDSSPLLQFGGQVRQRYLYTDDAQQTEAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 MDSDETGFEHSGLWVSVLAGLLLGACQAHPIPDSSPLLQFGGQVRQRYLYTDDAQQTEAH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LEIREDGTVGGAADQSPESLLQLKALKPGVIQILGVKTSRFLCQRPDGALYGSLHFDPEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 LEIREDGTVGGAADQSPESLLQLKALKPGVIQILGVKTSRFLCQRPDGALYGSLHFDPEA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CSFRELLLEDGYNVYQSEAHGLPLHLPGNKSPHRDPAPRGPARFLPLPGLPPAPPEPPGI ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: NP_061 CSFRELLLEDGYNVYQSEAHGLPLHLPGNKSPHRDPAPRGPARFLPLPGLPPALPEPPGI 130 140 150 160 170 180 190 200 pF1KE1 LAPQPPDVGSSDPLSMVGPSQGRSPSYAS ::::::::::::::::::::::::::::: NP_061 LAPQPPDVGSSDPLSMVGPSQGRSPSYAS 190 200 >>NP_005108 (OMIM: 603891) fibroblast growth factor 19 p (216 aa) initn: 294 init1: 273 opt: 371 Z-score: 247.9 bits: 52.9 E(85289): 4.5e-07 Smith-Waterman score: 371; 37.7% identity (61.8% similar) in 212 aa overlap (13-207:10-214) 10 20 30 40 50 pF1KE1 MDSDETGFEHSGLWVSVLAGLLLGACQAHPIP--DSSPLLQFG-GQ-VRQRYLYTDDAQQ .:. :::: : : ..:. :..: ...: :. .: :.:::. . NP_005 MRSGCVVVHVWI--LAGLWL-AVAGRPLAFSDAGPHVHYGWGDPIRLRHLYTSGPHG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 -TEAHLEIREDGTVGGAADQSPESLLQLKALKPGVIQILGVKTSRFLCQRPDGALYGSLH . :.:: ::.: : :: .:::..::. .. : ::.. :.::. :: . : :. NP_005 LSSCFLRIRADGVVDCARGQSAHSLLEIKAVALRTVAIKGVHSVRYLCMGADGKMQGLLQ 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 FDPEACSFRELLLEDGYNVYQSEAHGLPLHLPGNKSPHRDPAPRGPARFLPL----PGLP .. : :.:.: . ::::::.:: : ::. : . :. .. :: :::: : :: NP_005 YSEEDCAFEEEIRPDGYNVYRSEKHRLPVSLSSAKQ-RQLYKNRG---FLPLSHFLPMLP 120 130 140 150 160 170 180 190 200 pF1KE1 PAPPEPPGI-------LAPQPPDVGSSDPLSMV-GPSQGRSPSYAS .: :: . . .: .. : ::...: : ::::. NP_005 MVPEEPEDLRGHLESDMFSSPLETDSMDPFGLVTGLEAVRSPSFEK 180 190 200 210 >>NP_065689 (OMIM: 193100,605380) fibroblast growth fact (251 aa) initn: 279 init1: 228 opt: 312 Z-score: 211.7 bits: 46.4 E(85289): 4.7e-05 Smith-Waterman score: 312; 32.2% identity (57.6% similar) in 205 aa overlap (13-209:8-205) 10 20 30 40 50 pF1KE1 MDSDETGFEHSGLWVSVLAGLL-LGACQAHPIPDSSPLL--QFGGQVRQRYLYTDDAQQT ::: .: .. ... .:.: ..:::: ..:: . .::: :... NP_065 MLGARLRLWVCALCSVCSMSVLRAYP--NASPLLGSSWGGLI---HLYTATARNS 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 EAHLEIREDGTVGGAADQSPESLLQLKALKPGVIQILGVKTSRFLCQRPDGALYGSLHFD ::.:...: : :: :. : :.... : . : :: . :.::. : ..:: .:: NP_065 Y-HLQIHKNGHVDGAPHQTIYSALMIRSEDAGFVVITGVMSRRYLCMDFRGNIFGSHYFD 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 PEACSFRELLLEDGYNVYQSEAHGLPLHLPGNKS---PHRDPAPRGP--ARFLPLPGLPP :: : :.. ::.::.::.: . . . : : : .: : . .: .: . NP_065 PENCRFQHQTLENGYDVYHSPQYHFLVSLGRAKRAFLPGMNPPPYSQFLSRRNEIPLIHF 110 120 130 140 150 160 180 190 200 pF1KE1 APPEPPGILAPQPPDVGSSDPLSMVGPSQGRSPSYAS : : : . :::... : .:. :: NP_065 NTPIPRRHTRSAEDD-SERDPLNVLKPRARMTPAPASCSQELPSAEDNSPMASDPLGVVR 170 180 190 200 210 220 NP_065 GGRVNTHAGGTGPEGCRPFAKFI 230 240 250 209 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:46:35 2016 done: Sun Nov 6 22:46:36 2016 Total Scan time: 7.380 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]