FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2166, 353 aa 1>>>pF1KE2166 353 - 353 aa - 353 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7095+/-0.00074; mu= 10.2931+/- 0.045 mean_var=95.4569+/-19.083, 0's: 0 Z-trim(112.0): 6 B-trim: 80 in 2/48 Lambda= 0.131272 statistics sampled from 12808 (12811) to 12808 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.394), width: 16 Scan time: 2.520 The best scores are: opt bits E(32554) CCDS14041.1 A4GALT gene_id:53947|Hs108|chr22 ( 353) 2474 478.2 4.4e-135 CCDS3097.1 A4GNT gene_id:51146|Hs108|chr3 ( 340) 718 145.7 5.5e-35 >>CCDS14041.1 A4GALT gene_id:53947|Hs108|chr22 (353 aa) initn: 2474 init1: 2474 opt: 2474 Z-score: 2538.6 bits: 478.2 E(32554): 4.4e-135 Smith-Waterman score: 2474; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353) 10 20 30 40 50 60 pF1KE2 MSKPPDLLLRLLRGAPRQRVCTLFIIGFKFTFFVSIMIYWHVVGEPKEKGQLYNLPAEIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MSKPPDLLLRLLRGAPRQRVCTLFIIGFKFTFFVSIMIYWHVVGEPKEKGQLYNLPAEIP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 CPTLTPPTPPSHGPTPGNIFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 CPTLTPPTPPSHGPTPGNIFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 NASLPRHLGISLLSCFPNVQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 NASLPRHLGISLLSCFPNVQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 ALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGAFLAFERRHEFMALCMRDFVDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 ALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGAFLAFERRHEFMALCMRDFVDH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 YNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 YNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDIN 250 260 270 280 290 300 310 320 330 340 350 pF1KE2 PEELPRLLSATYAVHVWNKKSQGTRFEATSRALLAQLHARYCPTTHEAMKMYL ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 PEELPRLLSATYAVHVWNKKSQGTRFEATSRALLAQLHARYCPTTHEAMKMYL 310 320 330 340 350 >>CCDS3097.1 A4GNT gene_id:51146|Hs108|chr3 (340 aa) initn: 599 init1: 254 opt: 718 Z-score: 741.6 bits: 145.7 E(32554): 5.5e-35 Smith-Waterman score: 718; 38.4% identity (66.7% similar) in 315 aa overlap (50-349:18-323) 20 30 40 50 60 70 pF1KE2 VCTLFIIGFKFTFFVSIMIYWHVVGEPKEKGQLYNLPAEIPCPTLTPPTPPSHGPTPG-- : ::.. . : . :. :: . CCDS30 MRKELQLSLSVTLLLVCGFLYQFTLKSSC-LFCLPSFKSHQGLEALL 10 20 30 40 80 90 100 110 120 pF1KE2 ----NIFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGG-----NASLPRHL .: :::::.: .: : :::::::. .:: :. .:::: . :.. : CCDS30 SHRRGIVFLETSERMEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYP--- 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE2 GISLLSCFPNVQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRIALMWKFGG ..:.:: . :: ..:::...:..:::: .:: ... : : . :::::.:..::.:: CCDS30 AFSFLSAIDNVFLFPLDMKRLLEDTPLFSWYNQINASAERNWLHISSDASRLAIIWKYGG 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE2 IYLDTDFIVLKNLRNLTNVLGTQ-SRYVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWG ::.::: : .. . . : :..: ::: :: : .: .: :. ::..::.:::. ::: CCDS30 IYMDTDVISIRPIPE-ENFLAAQASRYSSNGIF-GFLPHHPFLWECMENFVEHYNSAIWG 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE2 HQGPQLLTRVFKKWCSIRSLAESRA--CRGVTTLPPEAFYPIPWQDWKKYFEDINPEELP .:::.:.::... ::..... : : ... : :. :::: ...:..:.: . : : CCDS30 NQGPELMTRMLRVWCKLEDFQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTE--P 230 240 250 260 270 310 320 330 340 350 pF1KE2 RLLSATYAVHVWNKKSQ-GTRFEATSRALLAQLHARYCPTTHEAMKMYL . ...::.:.::. .: : : .:. .:. ..:: :.. . CCDS30 SF-NVSYALHLWNHMNQEGRAVIRGSNTLVENLYRKHCPRTYRDLIKGPEGSVTGELGPG 280 290 300 310 320 330 CCDS30 NK 340 353 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:48:18 2016 done: Sun Nov 6 22:48:18 2016 Total Scan time: 2.520 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]