FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1321, 107 aa 1>>>pF1KE1321 107 - 107 aa - 107 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6028+/-0.000284; mu= 13.2488+/- 0.018 mean_var=55.2406+/-11.030, 0's: 0 Z-trim(118.2): 44 B-trim: 120 in 1/50 Lambda= 0.172562 statistics sampled from 30926 (30975) to 30926 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.363), width: 16 Scan time: 4.780 The best scores are: opt bits E(85289) NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107) 679 176.2 9.1e-45 NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107) 610 159.0 1.3e-39 NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107) 602 157.0 5.4e-39 NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114) 297 81.1 4.1e-16 NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 269 74.1 5.1e-14 NP_002695 (OMIM: 121010) platelet basic protein pr ( 128) 264 72.9 1.3e-13 NP_002610 (OMIM: 173460) platelet factor 4 precurs ( 101) 233 65.1 2.3e-11 NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 225 63.1 9e-11 NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125) 222 62.4 1.8e-10 XP_005265753 (OMIM: 173460) PREDICTED: platelet fa ( 110) 208 58.9 1.8e-09 NP_002611 (OMIM: 173461) platelet factor 4 variant ( 104) 207 58.6 2.1e-09 NP_004878 (OMIM: 604186) C-X-C motif chemokine 14 ( 111) 154 45.5 2.1e-05 NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119) 153 45.2 2.6e-05 XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109) 149 44.2 4.8e-05 NP_006410 (OMIM: 605149) C-X-C motif chemokine 13 ( 109) 149 44.2 4.8e-05 NP_954637 (OMIM: 600835,609423) stromal cell-deriv ( 89) 145 43.2 8.2e-05 NP_000600 (OMIM: 600835,609423) stromal cell-deriv ( 93) 145 43.2 8.5e-05 NP_005400 (OMIM: 604852) C-X-C motif chemokine 11 ( 94) 142 42.4 0.00014 NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140) 139 41.8 0.00033 NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 ( 98) 135 40.7 0.0005 NP_001289052 (OMIM: 604852) C-X-C motif chemokine ( 106) 130 39.5 0.0013 >>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu (107 aa) initn: 679 init1: 679 opt: 679 Z-score: 924.7 bits: 176.2 E(85289): 9.1e-45 Smith-Waterman score: 679; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KE1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV 10 20 30 40 50 60 70 80 90 100 pF1KE1 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN ::::::::::::::::::::::::::::::::::::::::::::::: NP_002 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 70 80 90 100 >>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu (107 aa) initn: 696 init1: 610 opt: 610 Z-score: 831.9 bits: 159.0 E(85289): 1.3e-39 Smith-Waterman score: 610; 87.9% identity (99.1% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KE1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV ::.:::::::::::::::::::::::::::::::: ..:::::::::::::::::::::: NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV 10 20 30 40 50 60 70 80 90 100 pF1KE1 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN .:.::::::::::::::::::.:::::::::::.:::::.:..:..: NP_002 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 70 80 90 100 >>NP_001502 (OMIM: 155730) growth-regulated alpha protei (107 aa) initn: 658 init1: 602 opt: 602 Z-score: 821.1 bits: 157.0 E(85289): 5.4e-39 Smith-Waterman score: 602; 86.9% identity (98.1% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KE1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV ::.:.:::::::::::::::::::::::.::::::::.::::::::::::::: :::::: NP_001 MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQTLQGIHPKNIQSV 10 20 30 40 50 60 70 80 90 100 pF1KE1 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN ::.::::::::::::::::::.:::::::::.:.:::::.::. ..: NP_001 NVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN 70 80 90 100 >>NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 precu (114 aa) initn: 315 init1: 283 opt: 297 Z-score: 410.3 bits: 81.1 E(85289): 4.1e-16 Smith-Waterman score: 297; 46.9% identity (76.5% similar) in 98 aa overlap (10-105:14-111) 10 20 30 40 50 pF1KE1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAG--ASVVTELRCQCLQTLQGIHL ::. ..::::: . .:: :.:. :::: :::: ::.: NP_002 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP 10 20 30 40 50 60 60 70 80 90 100 pF1KE1 KNIQSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN : :....: . ::.:...::.:.:::::. ::.: .:...:.:.:::. :. NP_002 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN 70 80 90 100 110 >>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu (114 aa) initn: 288 init1: 245 opt: 269 Z-score: 372.7 bits: 74.1 E(85289): 5.1e-14 Smith-Waterman score: 269; 42.9% identity (76.5% similar) in 98 aa overlap (10-105:14-111) 10 20 30 40 50 pF1KE1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAG--ASVVTELRCQCLQTLQGIHL ::. .:::::: . .:: ..:.::::: ::.. .. NP_002 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP 10 20 30 40 50 60 60 70 80 90 100 pF1KE1 KNIQSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN :.: ...: ::.:...::.:.:::::..::.: .:...:.:.:::..:. NP_002 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN 70 80 90 100 110 >>NP_002695 (OMIM: 121010) platelet basic protein prepro (128 aa) initn: 336 init1: 261 opt: 264 Z-score: 365.2 bits: 72.9 E(85289): 1.3e-13 Smith-Waterman score: 264; 48.1% identity (81.8% similar) in 77 aa overlap (25-101:45-121) 10 20 30 40 50 pF1KE1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHL :. ..... ... .::::.:..: .::: NP_002 RPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHP 20 30 40 50 60 70 60 70 80 90 100 pF1KE1 KNIQSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN :::::..: . : :: :.:::::::.:.: ::.: .: ..::..: : NP_002 KNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD 80 90 100 110 120 >>NP_002610 (OMIM: 173460) platelet factor 4 precursor [ (101 aa) initn: 176 init1: 151 opt: 233 Z-score: 325.0 bits: 65.1 E(85289): 2.3e-11 Smith-Waterman score: 233; 44.0% identity (72.5% similar) in 91 aa overlap (11-101:10-99) 10 20 30 40 50 60 pF1KE1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV : : :: ..:::: ::.: .: : .:.: :..: . .. ..: :. NP_002 MSSAAGFCASRPGLLFLGLLLLPLVVAFA-SAEAEEDGDLQCLCVKTTSQVRPRHITSL 10 20 30 40 50 70 80 90 100 pF1KE1 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN .: . :::: ...:::::::.: ::. .:. .:::.:.: NP_002 EVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES 60 70 80 90 100 >>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo (99 aa) initn: 215 init1: 150 opt: 225 Z-score: 314.3 bits: 63.1 E(85289): 9e-11 Smith-Waterman score: 225; 40.7% identity (70.3% similar) in 91 aa overlap (16-103:5-95) 10 20 30 40 50 pF1KE1 MAHATLSAAPSNPRLLRVALLLLLLVAAS--RRAAGASVVTELRCQCLQTL-QGIHLKNI : :::: .:..:. . :. . ::::::..: . .: : : NP_000 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFI 10 20 30 40 60 70 80 90 100 pF1KE1 QSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN . . : :::::.::.:. :..:.. ::.: ::...::.:.. NP_000 KELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 50 60 70 80 90 >>NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 precu (125 aa) initn: 193 init1: 143 opt: 222 Z-score: 308.9 bits: 62.4 E(85289): 1.8e-10 Smith-Waterman score: 222; 40.7% identity (77.9% similar) in 86 aa overlap (15-99:7-88) 10 20 30 40 50 pF1KE1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQG-IHLKNIQS :. ....::.:.... :. :: . ::.:..: :: :::..... NP_002 MKKSGVLFLLGIILLVLIGVQ----GTPVVRKGRCSCISTNQGTIHLQSLKD 10 20 30 40 60 70 80 90 100 pF1KE1 VNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN .. .:.: : . :.::::::: ..:::: : :...:.: NP_002 LKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKK 50 60 70 80 90 100 NP_002 KVLKVRKSQRSRQKKTT 110 120 >>XP_005265753 (OMIM: 173460) PREDICTED: platelet factor (110 aa) initn: 188 init1: 151 opt: 208 Z-score: 290.8 bits: 58.9 E(85289): 1.8e-09 Smith-Waterman score: 208; 37.2% identity (66.0% similar) in 94 aa overlap (8-101:20-108) 10 20 30 40 pF1KE1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQT :::. : :. : .. : . : .:.: :..: XP_005 MITATLNGEPAECLATVPGAAPAPPTWLEQLLSGGGVIYAEAEEDG-----DLQCLCVKT 10 20 30 40 50 50 60 70 80 90 100 pF1KE1 LQGIHLKNIQSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN . .. ..: :..: . :::: ...:::::::.: ::. .:. .:::.:.: XP_005 TSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES 60 70 80 90 100 110 107 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:48:51 2016 done: Sun Nov 6 22:48:52 2016 Total Scan time: 4.780 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]