FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5219, 206 aa
  1>>>pF1KE5219 206 - 206 aa - 206 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5435+/-0.0003; mu= 13.1247+/- 0.019
 mean_var=79.2553+/-16.247, 0's: 0 Z-trim(118.2): 3  B-trim: 44 in 1/52
 Lambda= 0.144065
 statistics sampled from 30900 (30903) to 30900 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.362), width:  16
 Scan time:  6.090

The best scores are:                                      opt bits E(85289)
NP_001536 (OMIM: 603000) peptidyl-tRNA hydrolase I ( 206) 1381 295.8 3.2e-80
NP_001290194 (OMIM: 603000) peptidyl-tRNA hydrolas ( 229) 1210 260.3 1.7e-69
XP_016880063 (OMIM: 603000) PREDICTED: peptidyl-tR ( 146)  934 202.8 2.2e-52


>>NP_001536 (OMIM: 603000) peptidyl-tRNA hydrolase ICT1,  (206 aa)
 initn: 1381 init1: 1381 opt: 1381  Z-score: 1561.2  bits: 295.8 E(85289): 3.2e-80
Smith-Waterman score: 1381; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)

               10        20        30        40        50        60
pF1KE5 MAATRCLRWGLSRAGVWLLPPPARCPRRALHKQKDGTEFKSIYSLDKLYPESQGSDTAWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAATRCLRWGLSRAGVWLLPPPARCPRRALHKQKDGTEFKSIYSLDKLYPESQGSDTAWR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VPNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRI
              130       140       150       160       170       180

              190       200      
pF1KE5 ENMNRERLRQKRIHSAVKTSRRVDMD
       ::::::::::::::::::::::::::
NP_001 ENMNRERLRQKRIHSAVKTSRRVDMD
              190       200      

>>NP_001290194 (OMIM: 603000) peptidyl-tRNA hydrolase IC  (229 aa)
 initn: 1209 init1: 1209 opt: 1210  Z-score: 1368.5  bits: 260.3 E(85289): 1.7e-69
Smith-Waterman score: 1210; 94.2% identity (97.9% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KE5 MAATRCLRWGLSRAGVWLLPPPARCPRRALHKQKDGTEFKSIYSLDKLYPESQGSDTAWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAATRCLRWGLSRAGVWLLPPPARCPRRALHKQKDGTEFKSIYSLDKLYPESQGSDTAWR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VPNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPNGAKQADSDIPLDRLTISYCRSSGPGGQNVNKVNSKAEVRFHLATAEWIAEPVRQKIA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
NP_001 ITHKNKINRLGELILTSESSRYQFRNLADCLQKIRDMITEASQTPKEPTKEDVKLHRIRK
              130       140       150       160       170       180

              190       200                             
pF1KE5 ENMNRERLRQKRIHSAVKTSRRVDMD                       
       .. .. . ..                                       
NP_001 HESGKAETKENSFCCKDKQEGRHGLKSPSAAGRALLGVRAAAAERTFTP
              190       200       210       220         

>>XP_016880063 (OMIM: 603000) PREDICTED: peptidyl-tRNA h  (146 aa)
 initn: 934 init1: 934 opt: 934  Z-score: 1061.3  bits: 202.8 E(85289): 2.2e-52
Smith-Waterman score: 934; 100.0% identity (100.0% similar) in 144 aa overlap (63-206:3-146)

             40        50        60        70        80        90  
pF1KE5 QKDGTEFKSIYSLDKLYPESQGSDTAWRVPNGAKQADSDIPLDRLTISYCRSSGPGGQNV
                                     ::::::::::::::::::::::::::::::
XP_016                             MENGAKQADSDIPLDRLTISYCRSSGPGGQNV
                                           10        20        30  

            100       110       120       130       140       150  
pF1KE5 NKVNSKAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKVNSKAEVRFHLATAEWIAEPVRQKIAITHKNKINRLGELILTSESSRYQFRNLADCLQ
             40        50        60        70        80        90  

            160       170       180       190       200      
pF1KE5 KIRDMITEASQTPKEPTKEDVKLHRIRIENMNRERLRQKRIHSAVKTSRRVDMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KIRDMITEASQTPKEPTKEDVKLHRIRIENMNRERLRQKRIHSAVKTSRRVDMD
            100       110       120       130       140      




206 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:37:14 2016 done: Mon Nov  7 22:37:15 2016
 Total Scan time:  6.090 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]