FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9277, 204 aa 1>>>pF1KE9277 204 - 204 aa - 204 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2055+/-0.000747; mu= 13.1821+/- 0.045 mean_var=53.3477+/-10.673, 0's: 0 Z-trim(107.0): 8 B-trim: 89 in 1/49 Lambda= 0.175597 statistics sampled from 9329 (9334) to 9329 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.287), width: 16 Scan time: 2.070 The best scores are: opt bits E(32554) CCDS10275.1 PPCDC gene_id:60490|Hs108|chr15 ( 204) 1374 355.7 1.1e-98 CCDS73760.1 PPCDC gene_id:60490|Hs108|chr15 ( 172) 874 229.0 1.3e-60 CCDS73759.1 PPCDC gene_id:60490|Hs108|chr15 ( 161) 587 156.3 9.5e-39 CCDS73761.1 PPCDC gene_id:60490|Hs108|chr15 ( 129) 585 155.8 1.1e-38 CCDS76781.1 PPCDC gene_id:60490|Hs108|chr15 ( 81) 561 149.6 4.9e-37 >>CCDS10275.1 PPCDC gene_id:60490|Hs108|chr15 (204 aa) initn: 1374 init1: 1374 opt: 1374 Z-score: 1885.0 bits: 355.7 E(32554): 1.1e-98 Smith-Waterman score: 1374; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204) 10 20 30 40 50 60 pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: CCDS10 SPQDIPVTLYSDADEWEIWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA 130 140 150 160 170 180 190 200 pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS :::::::::::::::::::::::: CCDS10 MAEVGTIVDKVKEVLFQHSGFQQS 190 200 >>CCDS73760.1 PPCDC gene_id:60490|Hs108|chr15 (172 aa) initn: 872 init1: 872 opt: 874 Z-score: 1201.6 bits: 229.0 E(32554): 1.3e-60 Smith-Waterman score: 1088; 83.8% identity (84.3% similar) in 204 aa overlap (1-204:1-172) 10 20 30 40 50 60 pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY :::::::::::::::::::::::::::::::::::::::::::::. CCDS73 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGI-------------- 10 20 30 40 70 80 90 100 110 120 pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL :::::::::::::::::::::::::::::::::::::::::: CCDS73 ------------------WKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL 50 60 70 80 130 140 150 160 170 180 pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA 90 100 110 120 130 140 190 200 pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS :::::::::::::::::::::::: CCDS73 MAEVGTIVDKVKEVLFQHSGFQQS 150 160 170 >>CCDS73759.1 PPCDC gene_id:60490|Hs108|chr15 (161 aa) initn: 1072 init1: 584 opt: 587 Z-score: 809.2 bits: 156.3 E(32554): 9.5e-39 Smith-Waterman score: 990; 78.9% identity (78.9% similar) in 204 aa overlap (1-204:1-161) 10 20 30 40 50 60 pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL ::::::::::::::::: CCDS73 SPQDIPVTLYSDADEWE------------------------------------------- 70 130 140 150 160 170 180 pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA 80 90 100 110 120 130 190 200 pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS :::::::::::::::::::::::: CCDS73 MAEVGTIVDKVKEVLFQHSGFQQS 140 150 160 >>CCDS73761.1 PPCDC gene_id:60490|Hs108|chr15 (129 aa) initn: 584 init1: 584 opt: 585 Z-score: 808.0 bits: 155.8 E(32554): 1.1e-38 Smith-Waterman score: 714; 63.2% identity (63.2% similar) in 204 aa overlap (1-204:1-129) 10 20 30 40 50 60 pF1KE9 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY ::::::::::::::::::::::::::::::::::::::::::::: CCDS73 MEPKASCPAAAPLMERKFHVLVGVTGSVAALKLPLLVSKLLDIPG--------------- 10 20 30 40 70 80 90 100 110 120 pF1KE9 SPQDIPVTLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLL CCDS73 ------------------------------------------------------------ 130 140 150 160 170 180 pF1KE9 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 TCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGA 50 60 70 80 90 100 190 200 pF1KE9 MAEVGTIVDKVKEVLFQHSGFQQS :::::::::::::::::::::::: CCDS73 MAEVGTIVDKVKEVLFQHSGFQQS 110 120 >>CCDS76781.1 PPCDC gene_id:60490|Hs108|chr15 (81 aa) initn: 561 init1: 561 opt: 561 Z-score: 778.5 bits: 149.6 E(32554): 4.9e-37 Smith-Waterman score: 561; 100.0% identity (100.0% similar) in 81 aa overlap (124-204:1-81) 100 110 120 130 140 150 pF1KE9 WADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQV :::::::::::::::::::::::::::::: CCDS76 MRAWDRSKPLLFCPAMNTAMWEHPITAQQV 10 20 30 160 170 180 190 200 pF1KE9 DQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVKEVLFQHSGFQQS ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 DQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVKEVLFQHSGFQQS 40 50 60 70 80 204 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:16:08 2016 done: Tue Nov 8 10:16:09 2016 Total Scan time: 2.070 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]