FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3636, 184 aa
  1>>>pF1KE3636 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3262+/-0.000659; mu= 6.4994+/- 0.040
 mean_var=160.0729+/-31.419, 0's: 0 Z-trim(117.1): 5  B-trim: 0 in 0/54
 Lambda= 0.101371
 statistics sampled from 17844 (17849) to 17844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.548), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS34714.1 PRKRIP1 gene_id:79706|Hs108|chr7       ( 184) 1198 185.4 1.7e-47


>>CCDS34714.1 PRKRIP1 gene_id:79706|Hs108|chr7            (184 aa)
 initn: 1198 init1: 1198 opt: 1198  Z-score: 966.2  bits: 185.4 E(32554): 1.7e-47
Smith-Waterman score: 1198; 99.5% identity (99.5% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KE3 MASPAASSVRPPRPKKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MASPAASSVRPPRPKKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 PEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLYAEFQKRLEKNKIAA
       ::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
CCDS34 PEFVRDVMGSSAGAGSGEFHVYRHLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 EEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEGPGQPKEQGSSSSAEASGTEEEEEVPSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEGPGQPKEQGSSSSAEASGTEEEEEVPSF
              130       140       150       160       170       180

           
pF1KE3 TMGR
       ::::
CCDS34 TMGR
           




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:58:01 2016 done: Sun Nov  6 22:58:01 2016
 Total Scan time:  2.290 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]