FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5509, 430 aa 1>>>pF1KE5509 430 - 430 aa - 430 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1034+/-0.000309; mu= 19.6811+/- 0.019 mean_var=74.7186+/-14.648, 0's: 0 Z-trim(117.6): 10 B-trim: 0 in 0/52 Lambda= 0.148375 statistics sampled from 29712 (29720) to 29712 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.348), width: 16 Scan time: 8.260 The best scores are: opt bits E(85289) NP_114108 (OMIM: 611972) 28S ribosomal protein S5, ( 430) 2911 632.1 8e-181 NP_001308924 (OMIM: 611972) 28S ribosomal protein ( 351) 2378 518.0 1.5e-146 NP_001308925 (OMIM: 611972) 28S ribosomal protein ( 264) 1458 320.9 2.4e-87 NP_001308926 (OMIM: 611972) 28S ribosomal protein ( 264) 1458 320.9 2.4e-87 >>NP_114108 (OMIM: 611972) 28S ribosomal protein S5, mit (430 aa) initn: 2911 init1: 2911 opt: 2911 Z-score: 3367.3 bits: 632.1 E(85289): 8e-181 Smith-Waterman score: 2911; 100.0% identity (100.0% similar) in 430 aa overlap (1-430:1-430) 10 20 30 40 50 60 pF1KE5 MATAVRAVGCLPVLCSGTAGHLLGRQCSLNTLPAASILAWKSVLGNGHLSSLGTRDTHPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 MATAVRAVGCLPVLCSGTAGHLLGRQCSLNTLPAASILAWKSVLGNGHLSSLGTRDTHPY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ASLSRALQTQCCISSPSHLMSQQYRPYSFFTKLTADELWKGALAETGAGAKKGRGKRTKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 ASLSRALQTQCCISSPSHLMSQQYRPYSFFTKLTADELWKGALAETGAGAKKGRGKRTKK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 KKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 KKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 RKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 RKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 IRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 IRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 THIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 THIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQ 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 QLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 QLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRS 370 380 390 400 410 420 430 pF1KE5 VWSNLKRAAT :::::::::: NP_114 VWSNLKRAAT 430 >>NP_001308924 (OMIM: 611972) 28S ribosomal protein S5, (351 aa) initn: 2378 init1: 2378 opt: 2378 Z-score: 2751.9 bits: 518.0 E(85289): 1.5e-146 Smith-Waterman score: 2378; 100.0% identity (100.0% similar) in 351 aa overlap (80-430:1-351) 50 60 70 80 90 100 pF1KE5 SSLGTRDTHPYASLSRALQTQCCISSPSHLMSQQYRPYSFFTKLTADELWKGALAETGAG :::::::::::::::::::::::::::::: NP_001 MSQQYRPYSFFTKLTADELWKGALAETGAG 10 20 30 110 120 130 140 150 160 pF1KE5 AKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVE 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE5 ADMIQQREEWDRKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ADMIQQREEWDRKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVF 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE5 TMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHT 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE5 IFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGL 220 230 240 250 260 270 350 360 370 380 390 400 pF1KE5 FRGLSRQETHQQLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEVPDVKLDWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FRGLSRQETHQQLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEVPDVKLDWE 280 290 300 310 320 330 410 420 430 pF1KE5 DVKTAQGMKRSVWSNLKRAAT ::::::::::::::::::::: NP_001 DVKTAQGMKRSVWSNLKRAAT 340 350 >>NP_001308925 (OMIM: 611972) 28S ribosomal protein S5, (264 aa) initn: 1451 init1: 1451 opt: 1458 Z-score: 1689.3 bits: 320.9 E(85289): 2.4e-87 Smith-Waterman score: 1458; 87.5% identity (91.4% similar) in 257 aa overlap (177-430:10-264) 150 160 170 180 190 200 pF1KE5 PLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWDRKKKMKVKRERGWSGNSWGGIS---L :.:. . :. :. :.. . . NP_001 MARTECPSYEKWSSADHCPKKQGRAGEGGGRHDPAERRV 10 20 30 210 220 230 240 250 260 pF1KE5 GPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATD :: . ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GPKEEDE--ETYEDFDTRILEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATD 40 50 60 70 80 90 270 280 290 300 310 320 pF1KE5 RMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITI 100 110 120 130 140 150 330 340 350 360 370 380 pF1KE5 CRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQQLADKKGLHVVEIREECGPLPIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQQLADKKGLHVVEIREECGPLPIV 160 170 180 190 200 210 390 400 410 420 430 pF1KE5 VASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRSVWSNLKRAAT ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRSVWSNLKRAAT 220 230 240 250 260 >>NP_001308926 (OMIM: 611972) 28S ribosomal protein S5, (264 aa) initn: 1451 init1: 1451 opt: 1458 Z-score: 1689.3 bits: 320.9 E(85289): 2.4e-87 Smith-Waterman score: 1458; 87.5% identity (91.4% similar) in 257 aa overlap (177-430:10-264) 150 160 170 180 190 200 pF1KE5 PLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWDRKKKMKVKRERGWSGNSWGGIS---L :.:. . :. :. :.. . . NP_001 MARTECPSYEKWSSADHCPKKQGRAGEGGGRHDPAERRV 10 20 30 210 220 230 240 250 260 pF1KE5 GPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATD :: . ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GPKEEDE--ETYEDFDTRILEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATD 40 50 60 70 80 90 270 280 290 300 310 320 pF1KE5 RMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITI 100 110 120 130 140 150 330 340 350 360 370 380 pF1KE5 CRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQQLADKKGLHVVEIREECGPLPIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQQLADKKGLHVVEIREECGPLPIV 160 170 180 190 200 210 390 400 410 420 430 pF1KE5 VASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRSVWSNLKRAAT ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRSVWSNLKRAAT 220 230 240 250 260 430 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:20:45 2016 done: Tue Nov 8 01:20:46 2016 Total Scan time: 8.260 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]