FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5509, 430 aa
  1>>>pF1KE5509 430 - 430 aa - 430 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5502+/-0.000679; mu= 16.9441+/- 0.041
 mean_var=76.4887+/-15.219, 0's: 0 Z-trim(111.0): 12  B-trim: 5 in 1/51
 Lambda= 0.146648
 statistics sampled from 12044 (12045) to 12044 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.37), width:  16
 Scan time:  2.620

The best scores are:                                      opt bits E(32554)
CCDS2010.1 MRPS5 gene_id:64969|Hs108|chr2          ( 430) 2911 624.9 4.5e-179


>>CCDS2010.1 MRPS5 gene_id:64969|Hs108|chr2               (430 aa)
 initn: 2911 init1: 2911 opt: 2911  Z-score: 3328.4  bits: 624.9 E(32554): 4.5e-179
Smith-Waterman score: 2911; 100.0% identity (100.0% similar) in 430 aa overlap (1-430:1-430)

               10        20        30        40        50        60
pF1KE5 MATAVRAVGCLPVLCSGTAGHLLGRQCSLNTLPAASILAWKSVLGNGHLSSLGTRDTHPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MATAVRAVGCLPVLCSGTAGHLLGRQCSLNTLPAASILAWKSVLGNGHLSSLGTRDTHPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ASLSRALQTQCCISSPSHLMSQQYRPYSFFTKLTADELWKGALAETGAGAKKGRGKRTKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 ASLSRALQTQCCISSPSHLMSQQYRPYSFFTKLTADELWKGALAETGAGAKKGRGKRTKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 KKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 KKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 RKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 RKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 IRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 IRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 THIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 THIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 QLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 QLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRS
              370       380       390       400       410       420

              430
pF1KE5 VWSNLKRAAT
       ::::::::::
CCDS20 VWSNLKRAAT
              430




430 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:20:44 2016 done: Tue Nov  8 01:20:44 2016
 Total Scan time:  2.620 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]