Result of FASTA (omim) for
pFN21AB5687
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5687, 244 aa
1>>>pF1KB5687 244 - 244 aa - 244 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4882+/-0.000464; mu= 20.0043+/- 0.029
mean_var=93.7330+/-19.225, 0's: 0 Z-trim(111.9): 367 B-trim: 502 in 1/52
Lambda= 0.132473
statistics sampled from 20201 (20634) to 20201 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.242), width: 16
Scan time: 5.540
The best scores are: opt bits E(85289)
NP_005159 (OMIM: 602924) rho-related GTP-binding p ( 244) 1615 318.9 5.2e-87
NP_001241667 (OMIM: 602924) rho-related GTP-bindin ( 244) 1615 318.9 5.2e-87
NP_005431 (OMIM: 601555) rho-related GTP-binding p ( 227) 1021 205.3 7.5e-53
XP_011523618 (OMIM: 601555) PREDICTED: rho-related ( 234) 1016 204.4 1.5e-52
NP_055285 (OMIM: 609038) rho-related GTP-binding p ( 232) 988 199.0 6e-51
XP_011523619 (OMIM: 601555) PREDICTED: rho-related ( 206) 861 174.7 1.1e-43
NP_001300870 (OMIM: 165390) transforming protein R ( 193) 661 136.4 3.5e-32
NP_001655 (OMIM: 165390) transforming protein RhoA ( 193) 661 136.4 3.5e-32
NP_001036143 (OMIM: 165380) rho-related GTP-bindin ( 193) 658 135.8 5.2e-32
NP_001036144 (OMIM: 165380) rho-related GTP-bindin ( 193) 658 135.8 5.2e-32
NP_786886 (OMIM: 165380) rho-related GTP-binding p ( 193) 658 135.8 5.2e-32
NP_004031 (OMIM: 165370) rho-related GTP-binding p ( 196) 643 133.0 3.8e-31
NP_055393 (OMIM: 605781) rho-related GTP-binding p ( 210) 577 120.4 2.5e-27
NP_008839 (OMIM: 602048) ras-related C3 botulinum ( 192) 569 118.8 6.9e-27
XP_005252973 (OMIM: 179505) PREDICTED: rho-related ( 191) 565 118.0 1.2e-26
NP_001656 (OMIM: 179505) rho-related GTP-binding p ( 191) 565 118.0 1.2e-26
XP_016873208 (OMIM: 179505) PREDICTED: rho-related ( 191) 565 118.0 1.2e-26
NP_005043 (OMIM: 602050) ras-related C3 botulinum ( 192) 555 116.1 4.4e-26
NP_001300872 (OMIM: 165390) transforming protein R ( 187) 548 114.8 1.1e-25
NP_036381 (OMIM: 605857) rho-related GTP-binding p ( 205) 544 114.1 2e-25
NP_002863 (OMIM: 602049,608203) ras-related C3 bot ( 192) 543 113.8 2.1e-25
NP_426359 (OMIM: 116952,616737) cell division cont ( 191) 513 108.1 1.1e-23
NP_001782 (OMIM: 116952,616737) cell division cont ( 191) 508 107.1 2.2e-23
NP_001034891 (OMIM: 116952,616737) cell division c ( 191) 508 107.1 2.2e-23
NP_001303236 (OMIM: 602050) ras-related C3 botulin ( 170) 501 105.7 5.2e-23
NP_065714 (OMIM: 607653) rho-related GTP-binding p ( 214) 500 105.7 6.8e-23
NP_067028 (OMIM: 606366) rho-related GTP-binding p ( 258) 495 104.8 1.5e-22
XP_006724349 (OMIM: 602049,608203) PREDICTED: ras- ( 161) 489 103.4 2.5e-22
XP_011531028 (OMIM: 605857) PREDICTED: rho-related ( 192) 463 98.6 8.6e-21
XP_016859205 (OMIM: 605857) PREDICTED: rho-related ( 172) 462 98.3 9.2e-21
XP_006720277 (OMIM: 607653) PREDICTED: rho-related ( 176) 430 92.2 6.5e-19
NP_001265292 (OMIM: 602037) rho-related GTP-bindin ( 191) 429 92.0 7.8e-19
NP_001265288 (OMIM: 602037) rho-related GTP-bindin ( 191) 429 92.0 7.8e-19
NP_001265291 (OMIM: 602037) rho-related GTP-bindin ( 191) 429 92.0 7.8e-19
NP_001265295 (OMIM: 602037) rho-related GTP-bindin ( 191) 429 92.0 7.8e-19
NP_001265294 (OMIM: 602037) rho-related GTP-bindin ( 191) 429 92.0 7.8e-19
NP_001265297 (OMIM: 602037) rho-related GTP-bindin ( 191) 429 92.0 7.8e-19
NP_004301 (OMIM: 602037) rho-related GTP-binding p ( 191) 429 92.0 7.8e-19
NP_001265293 (OMIM: 602037) rho-related GTP-bindin ( 191) 429 92.0 7.8e-19
XP_016863678 (OMIM: 602037) PREDICTED: rho-related ( 191) 429 92.0 7.8e-19
NP_001265298 (OMIM: 602037) rho-related GTP-bindin ( 191) 429 92.0 7.8e-19
XP_011511994 (OMIM: 602037) PREDICTED: rho-related ( 191) 429 92.0 7.8e-19
NP_001265290 (OMIM: 602037) rho-related GTP-bindin ( 191) 429 92.0 7.8e-19
NP_001265296 (OMIM: 602037) rho-related GTP-bindin ( 191) 429 92.0 7.8e-19
NP_001265289 (OMIM: 602037) rho-related GTP-bindin ( 191) 429 92.0 7.8e-19
XP_016863677 (OMIM: 602037) PREDICTED: rho-related ( 191) 429 92.0 7.8e-19
NP_001300873 (OMIM: 165390) transforming protein R ( 173) 397 85.9 5.1e-17
XP_011531030 (OMIM: 605857) PREDICTED: rho-related ( 157) 360 78.7 6.4e-15
NP_061485 (OMIM: 602048) ras-related C3 botulinum ( 211) 323 71.8 1e-12
NP_001300874 (OMIM: 165390) transforming protein R ( 112) 309 68.8 4.5e-12
>>NP_005159 (OMIM: 602924) rho-related GTP-binding prote (244 aa)
initn: 1615 init1: 1615 opt: 1615 Z-score: 1683.0 bits: 318.9 E(85289): 5.2e-87
Smith-Waterman score: 1615; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
190 200 210 220 230 240
pF1KB5 CTVM
::::
NP_005 CTVM
>>NP_001241667 (OMIM: 602924) rho-related GTP-binding pr (244 aa)
initn: 1615 init1: 1615 opt: 1615 Z-score: 1683.0 bits: 318.9 E(85289): 5.2e-87
Smith-Waterman score: 1615; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
190 200 210 220 230 240
pF1KB5 CTVM
::::
NP_001 CTVM
>>NP_005431 (OMIM: 601555) rho-related GTP-binding prote (227 aa)
initn: 1015 init1: 975 opt: 1021 Z-score: 1069.8 bits: 205.3 E(85289): 7.5e-53
Smith-Waterman score: 1021; 64.0% identity (89.3% similar) in 225 aa overlap (20-244:4-227)
10 20 30 40 50 60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
:. .::::::::..:::::::.::::: .: .:::::::::
NP_005 MEGQSGRCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY
10 20 30 40
70 80 90 100 110 120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
::::::: .::::..:::::: ::::::::.::::::::::::::::::::::::::.::
NP_005 TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
::::::.:..::::: :.:::..:: :::..: ::...::. .:::.::..:.:::.
NP_005 TQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
.:: ::::.:::::.: ... .....:. :.:. .: ... .::. . ...::.:::
NP_005 SSERSVRDVFHVATVASLGRGHRQLRRTDSRRGMQRSAQLSGRPD-RGNEGEIHKDRAKS
170 180 190 200 210 220
pF1KB5 CTVM
:..:
NP_005 CNLM
>>XP_011523618 (OMIM: 601555) PREDICTED: rho-related GTP (234 aa)
initn: 1010 init1: 975 opt: 1016 Z-score: 1064.5 bits: 204.4 E(85289): 1.5e-52
Smith-Waterman score: 1016; 63.6% identity (89.3% similar) in 225 aa overlap (20-244:4-227)
10 20 30 40 50 60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
:. .::::::::..:::::::.::::: .: .:::::::::
XP_011 MEGQSGRCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY
10 20 30 40
70 80 90 100 110 120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
::::::: .::::..:::::: ::::::::.::::::::::::::::::::::::::.::
XP_011 TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
::::::.:..::::: :.:::..:: :::..: ::...::. .:::.::..:.:::.
XP_011 TQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
.:: ::::.:::::.: ... .....:. :.:. .: ... .::. . ...::.:::
XP_011 SSERSVRDVFHVATVASLGRGHRQLRRTDSRRGMQRSAQLSGRPD-RGNEGEIHKDRAKS
170 180 190 200 210 220
pF1KB5 CTVM
:...
XP_011 CNLIYSHTSNL
230
>>NP_055285 (OMIM: 609038) rho-related GTP-binding prote (232 aa)
initn: 970 init1: 936 opt: 988 Z-score: 1035.6 bits: 199.0 E(85289): 6e-51
Smith-Waterman score: 1001; 58.2% identity (83.2% similar) in 244 aa overlap (1-244:1-232)
10 20 30 40 50 60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
:::::: : . .. ::.:.::: ::::::.:.:.::::.::.:::::::::
NP_055 MKERRAPQPVVAR----------CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
:: .: . ::.::::::::::::::::::: : ::::::.:::::::::.::.::::. :
NP_055 TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
: ..::.:..::.:::.:::::.:::.:::...:.:.::.:: .:::.:: :.: ::.
NP_055 ILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
::.:...::..:.. :.:: . ... . .::. :.::: :: ... ..:.::::
NP_055 TSEKSIHSIFRTASMLCLNKPSPLPQKSPVRSLSKRLLHLPSRSEL--ISSTFKKEKAKS
180 190 200 210 220
pF1KB5 CTVM
:..:
NP_055 CSIM
230
>>XP_011523619 (OMIM: 601555) PREDICTED: rho-related GTP (206 aa)
initn: 861 init1: 826 opt: 861 Z-score: 905.0 bits: 174.7 E(85289): 1.1e-43
Smith-Waterman score: 861; 62.4% identity (89.2% similar) in 194 aa overlap (51-244:7-199)
30 40 50 60 70 80
pF1KB5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG
.:::::::::::::::: .::::..:::::
XP_011 MGMGTRSYVPTVFENYTASFEIDKRRIELNMWDTSG
10 20 30
90 100 110 120 130 140
pF1KB5 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR
: ::::::::.::::::::::::::::::::::::::.:: ::::::.:..::::: :.:
XP_011 SSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB5 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK
::..:: :::..: ::...::. .:::.::..:.:::. .:: ::::.:::::.: ...
XP_011 TDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGR
100 110 120 130 140 150
210 220 230 240
pF1KB5 TNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKSCTVM
.....:. :.:. .: ... .::. . ...::.::::...
XP_011 GHRQLRRTDSRRGMQRSAQLSGRPDRGN-EGEIHKDRAKSCNLIYSHTSNL
160 170 180 190 200
>>NP_001300870 (OMIM: 165390) transforming protein RhoA (193 aa)
initn: 627 init1: 627 opt: 661 Z-score: 698.7 bits: 136.4 E(85289): 3.5e-32
Smith-Waterman score: 661; 52.0% identity (84.0% similar) in 175 aa overlap (22-196:4-177)
10 20 30 40 50 60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
.. :.:.:::. :::: :: ::.:: ::: :::::::::
NP_001 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY
10 20 30 40
70 80 90 100 110 120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
.:..:.: ...::.::::.:. :: .:::::::.:..:.::.:. :..:... .:: :
NP_001 VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
...::::. ..::: :.:::.: : ::.. .: ::. ..: .::..::: :.::::
NP_001 VKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA-
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
.....::..:..:: :
NP_001 KTKDGVREVFEMATRAALQARRGKKKSGCLVL
170 180 190
>>NP_001655 (OMIM: 165390) transforming protein RhoA iso (193 aa)
initn: 627 init1: 627 opt: 661 Z-score: 698.7 bits: 136.4 E(85289): 3.5e-32
Smith-Waterman score: 661; 52.0% identity (84.0% similar) in 175 aa overlap (22-196:4-177)
10 20 30 40 50 60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
.. :.:.:::. :::: :: ::.:: ::: :::::::::
NP_001 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY
10 20 30 40
70 80 90 100 110 120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
.:..:.: ...::.::::.:. :: .:::::::.:..:.::.:. :..:... .:: :
NP_001 VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
...::::. ..::: :.:::.: : ::.. .: ::. ..: .::..::: :.::::
NP_001 VKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSA-
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
.....::..:..:: :
NP_001 KTKDGVREVFEMATRAALQARRGKKKSGCLVL
170 180 190
>>NP_001036143 (OMIM: 165380) rho-related GTP-binding pr (193 aa)
initn: 619 init1: 619 opt: 658 Z-score: 695.6 bits: 135.8 E(85289): 5.2e-32
Smith-Waterman score: 658; 48.7% identity (80.6% similar) in 191 aa overlap (22-212:4-188)
10 20 30 40 50 60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
.. :.:.:::. :::: :: ::.:: ::: :::::::::
NP_001 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY
10 20 30 40
70 80 90 100 110 120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
:..:.: ...::.::::.:. :: .:::::::.:..:.::.:. :..:... .:: :
NP_001 IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
...::::. ..::: :.::: : : ::.. .: :: ..: .::..:.: :.::::
NP_001 VKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA-
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
.....::..:..:: ... .:..:: .:
NP_001 KTKEGVREVFEMAT-----RAGLQVRKNKRRRGCPIL
170 180 190
pF1KB5 CTVM
>>NP_001036144 (OMIM: 165380) rho-related GTP-binding pr (193 aa)
initn: 619 init1: 619 opt: 658 Z-score: 695.6 bits: 135.8 E(85289): 5.2e-32
Smith-Waterman score: 658; 48.7% identity (80.6% similar) in 191 aa overlap (22-212:4-188)
10 20 30 40 50 60
pF1KB5 MKERRASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY
.. :.:.:::. :::: :: ::.:: ::: :::::::::
NP_001 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY
10 20 30 40
70 80 90 100 110 120
pF1KB5 TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE
:..:.: ...::.::::.:. :: .:::::::.:..:.::.:. :..:... .:: :
NP_001 IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 IQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL
...::::. ..::: :.::: : : ::.. .: :: ..: .::..:.: :.::::
NP_001 VKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA-
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 QSENSVRDIFHVATLACVNKTNKNVKRNKSQRATKRISHMPSRPELSAVATDLRKDKAKS
.....::..:..:: ... .:..:: .:
NP_001 KTKEGVREVFEMAT-----RAGLQVRKNKRRRGCPIL
170 180 190
pF1KB5 CTVM
244 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:12:53 2016 done: Sat Nov 5 13:12:54 2016
Total Scan time: 5.540 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]