FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2412, 176 aa
  1>>>pF1KE2412 176 - 176 aa - 176 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4748+/-0.00065; mu= 9.2391+/- 0.040
 mean_var=106.3896+/-21.640, 0's: 0 Z-trim(114.9): 8  B-trim: 374 in 1/52
 Lambda= 0.124344
 statistics sampled from 15436 (15443) to 15436 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.474), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS75780.1 MAL2 gene_id:114569|Hs108|chr8         ( 176) 1206 225.5 1.3e-59


>>CCDS75780.1 MAL2 gene_id:114569|Hs108|chr8              (176 aa)
 initn: 1206 init1: 1206 opt: 1206  Z-score: 1183.6  bits: 225.5 E(32554): 1.3e-59
Smith-Waterman score: 1206; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)

               10        20        30        40        50        60
pF1KE2 MSAGGASVPPPPNPAVSFPPPRVTLPAGPDILRTYSGAFVCLEILFGGLVWILVASSNVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MSAGGASVPPPPNPAVSFPPPRVTLPAGPDILRTYSGAFVCLEILFGGLVWILVASSNVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LPLLQGWVMFVSVTAFFFSLLFLGMFLSGMVAQIDANWNFLDFAYHFTVFVFYFGAFLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LPLLQGWVMFVSVTAFFFSLLFLGMFLSGMVAQIDANWNFLDFAYHFTVFVFYFGAFLLE
               70        80        90       100       110       120

              130       140       150       160       170      
pF1KE2 AAATSLHDLHCNTTITGQPLLSDNQYNINVAASIFAFMTTACYGCSLGLALRRWRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AAATSLHDLHCNTTITGQPLLSDNQYNINVAASIFAFMTTACYGCSLGLALRRWRP
              130       140       150       160       170      




176 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:20:47 2016 done: Sat Nov  5 19:20:47 2016
 Total Scan time:  2.190 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]