FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1432, 200 aa 1>>>pF1KE1432 200 - 200 aa - 200 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4642+/-0.000333; mu= 7.3803+/- 0.021 mean_var=82.8048+/-15.874, 0's: 0 Z-trim(115.9): 21 B-trim: 126 in 1/58 Lambda= 0.140944 statistics sampled from 26730 (26751) to 26730 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.314), width: 16 Scan time: 6.420 The best scores are: opt bits E(85289) XP_006711966 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72 XP_016860757 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72 XP_005246241 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72 XP_005246242 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72 XP_016860756 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72 XP_011508718 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72 NP_004754 (OMIM: 607153) integrin beta-1-binding p ( 200) 1272 268.0 7.3e-72 NP_001305995 (OMIM: 607153) integrin beta-1-bindin ( 200) 1272 268.0 7.3e-72 XP_005246240 (OMIM: 607153) PREDICTED: integrin be ( 200) 1272 268.0 7.3e-72 NP_001305997 (OMIM: 607153) integrin beta-1-bindin ( 200) 1272 268.0 7.3e-72 NP_001305996 (OMIM: 607153) integrin beta-1-bindin ( 200) 1272 268.0 7.3e-72 NP_001305998 (OMIM: 607153) integrin beta-1-bindin ( 156) 979 208.4 5e-54 XP_016860759 (OMIM: 607153) PREDICTED: integrin be ( 150) 802 172.4 3.3e-43 XP_005246246 (OMIM: 607153) PREDICTED: integrin be ( 150) 802 172.4 3.3e-43 NP_071729 (OMIM: 607153) integrin beta-1-binding p ( 150) 802 172.4 3.3e-43 XP_016860758 (OMIM: 607153) PREDICTED: integrin be ( 150) 802 172.4 3.3e-43 NP_001305999 (OMIM: 607153) integrin beta-1-bindin ( 128) 684 148.4 4.8e-36 >>XP_006711966 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa) initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72 Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: XP_006 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA 130 140 150 160 170 180 190 200 pF1KE1 QAICKVLSTAFDSVLTSEKP :::::::::::::::::::: XP_006 QAICKVLSTAFDSVLTSEKP 190 200 >>XP_016860757 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa) initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72 Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: XP_016 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA 130 140 150 160 170 180 190 200 pF1KE1 QAICKVLSTAFDSVLTSEKP :::::::::::::::::::: XP_016 QAICKVLSTAFDSVLTSEKP 190 200 >>XP_005246241 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa) initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72 Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: XP_005 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA 130 140 150 160 170 180 190 200 pF1KE1 QAICKVLSTAFDSVLTSEKP :::::::::::::::::::: XP_005 QAICKVLSTAFDSVLTSEKP 190 200 >>XP_005246242 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa) initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72 Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: XP_005 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA 130 140 150 160 170 180 190 200 pF1KE1 QAICKVLSTAFDSVLTSEKP :::::::::::::::::::: XP_005 QAICKVLSTAFDSVLTSEKP 190 200 >>XP_016860756 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa) initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72 Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: XP_016 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA 130 140 150 160 170 180 190 200 pF1KE1 QAICKVLSTAFDSVLTSEKP :::::::::::::::::::: XP_016 QAICKVLSTAFDSVLTSEKP 190 200 >>XP_011508718 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa) initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72 Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: XP_011 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA 130 140 150 160 170 180 190 200 pF1KE1 QAICKVLSTAFDSVLTSEKP :::::::::::::::::::: XP_011 QAICKVLSTAFDSVLTSEKP 190 200 >>NP_004754 (OMIM: 607153) integrin beta-1-binding prote (200 aa) initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72 Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: NP_004 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA 130 140 150 160 170 180 190 200 pF1KE1 QAICKVLSTAFDSVLTSEKP :::::::::::::::::::: NP_004 QAICKVLSTAFDSVLTSEKP 190 200 >>NP_001305995 (OMIM: 607153) integrin beta-1-binding pr (200 aa) initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72 Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: NP_001 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA 130 140 150 160 170 180 190 200 pF1KE1 QAICKVLSTAFDSVLTSEKP :::::::::::::::::::: NP_001 QAICKVLSTAFDSVLTSEKP 190 200 >>XP_005246240 (OMIM: 607153) PREDICTED: integrin beta-1 (200 aa) initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72 Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: XP_005 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA 130 140 150 160 170 180 190 200 pF1KE1 QAICKVLSTAFDSVLTSEKP :::::::::::::::::::: XP_005 QAICKVLSTAFDSVLTSEKP 190 200 >>NP_001305997 (OMIM: 607153) integrin beta-1-binding pr (200 aa) initn: 1272 init1: 1272 opt: 1272 Z-score: 1411.1 bits: 268.0 E(85289): 7.3e-72 Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: NP_001 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA 130 140 150 160 170 180 190 200 pF1KE1 QAICKVLSTAFDSVLTSEKP :::::::::::::::::::: NP_001 QAICKVLSTAFDSVLTSEKP 190 200 200 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:01:55 2016 done: Sun Nov 6 23:01:55 2016 Total Scan time: 6.420 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]