FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1432, 200 aa
  1>>>pF1KE1432 200 - 200 aa - 200 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2038+/-0.000762; mu= 8.6382+/- 0.046
 mean_var=72.9633+/-13.940, 0's: 0 Z-trim(108.0): 23  B-trim: 20 in 1/52
 Lambda= 0.150149
 statistics sampled from 9928 (9937) to 9928 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.305), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS1662.1 ITGB1BP1 gene_id:9270|Hs108|chr2        ( 200) 1272 284.4 3.2e-77
CCDS1663.1 ITGB1BP1 gene_id:9270|Hs108|chr2        ( 150)  802 182.5 1.1e-46


>>CCDS1662.1 ITGB1BP1 gene_id:9270|Hs108|chr2             (200 aa)
 initn: 1272 init1: 1272 opt: 1272  Z-score: 1499.8  bits: 284.4 E(32554): 3.2e-77
Smith-Waterman score: 1272; 99.5% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA
       :::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
CCDS16 VSTSDQYDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQA
              130       140       150       160       170       180

              190       200
pF1KE1 QAICKVLSTAFDSVLTSEKP
       ::::::::::::::::::::
CCDS16 QAICKVLSTAFDSVLTSEKP
              190       200

>>CCDS1663.1 ITGB1BP1 gene_id:9270|Hs108|chr2             (150 aa)
 initn: 834 init1: 802 opt: 802  Z-score: 951.7  bits: 182.5 E(32554): 1.1e-46
Smith-Waterman score: 832; 75.0% identity (75.0% similar) in 200 aa overlap (1-200:1-150)

               10        20        30        40        50        60
pF1KE1 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MFRKGKKRHSSSSSQSSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 AEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VSTSDQYDVLHRHALYLIIRMVCYDDGLGVGKSLLALKTTDASNEEYSLWVYQCNSLEQA
       :::::::                                                  :::
CCDS16 VSTSDQY--------------------------------------------------EQA
                                                                130

              190       200
pF1KE1 QAICKVLSTAFDSVLTSEKP
       ::::::::::::::::::::
CCDS16 QAICKVLSTAFDSVLTSEKP
              140       150




200 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:01:54 2016 done: Sun Nov  6 23:01:54 2016
 Total Scan time:  2.130 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]