FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1414, 224 aa 1>>>pF1KE1414 224 - 224 aa - 224 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1790+/-0.000652; mu= 15.2623+/- 0.039 mean_var=70.4982+/-13.885, 0's: 0 Z-trim(111.5): 8 B-trim: 0 in 0/53 Lambda= 0.152751 statistics sampled from 12423 (12427) to 12423 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.382), width: 16 Scan time: 1.990 The best scores are: opt bits E(32554) CCDS2608.1 TIMP4 gene_id:7079|Hs108|chr3 ( 224) 1590 358.7 1.7e-99 CCDS11758.1 TIMP2 gene_id:7077|Hs108|chr17 ( 220) 780 180.2 9.2e-46 CCDS13911.1 TIMP3 gene_id:7078|Hs108|chr22 ( 211) 706 163.9 7.2e-41 CCDS14281.1 TIMP1 gene_id:7076|Hs108|chrX ( 207) 502 118.9 2.4e-27 >>CCDS2608.1 TIMP4 gene_id:7079|Hs108|chr3 (224 aa) initn: 1590 init1: 1590 opt: 1590 Z-score: 1899.6 bits: 358.7 E(32554): 1.7e-99 Smith-Waterman score: 1590; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224) 10 20 30 40 50 60 pF1KE1 MPGSPRPAPSWVLLLRLLALLRPPGLGEACSCAPAHPQQHICHSALVIRAKISSEKVVPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 MPGSPRPAPSWVLLLRLLALLRPPGLGEACSCAPAHPQQHICHSALVIRAKISSEKVVPA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SADPADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEANSQKQYLLTGQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 SADPADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEANSQKQYLLTGQV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCGCQITTCYTVPCTISAPNECLWTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 LSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCGCQITTCYTVPCTISAPNECLWTD 130 140 150 160 170 180 190 200 210 220 pF1KE1 WLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP :::::::::::::::::::::::::::::::::::::::::::: CCDS26 WLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP 190 200 210 220 >>CCDS11758.1 TIMP2 gene_id:7077|Hs108|chr17 (220 aa) initn: 812 init1: 564 opt: 780 Z-score: 935.0 bits: 180.2 E(32554): 9.2e-46 Smith-Waterman score: 780; 50.0% identity (80.2% similar) in 212 aa overlap (14-224:14-220) 10 20 30 40 50 60 pF1KE1 MPGSPRPAPSWVLLLRLLALLRPPGLGEACSCAPAHPQQHICHSALVIRAKISSEKVVPA :: : .:::: ..::::.:.:::: .:.. .::::: ::: : . CCDS11 MGAAARTLRLALGLLLLATLLRP---ADACSCSPVHPQQAFCNADVVIRAKAVSEKEVDS 10 20 30 40 50 70 80 90 100 110 pF1KE1 SADP-ADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEANSQKQYLLTGQ . : .. : ..::::::::::: : ::...::: .:..:::.:.....:.::..:. CCDS11 GNDIYGNPIKRIQYEIKQIKMFKGPE--KDIEFIYTAPSSAVCGVSLDVGGKKEYLIAGK 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 VLSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCGCQITTCYTVPCTISAPNECLWT . .:::. : ::..: ::. :: .:..::::.:...: :.:: : .:: ::.:.:::: CCDS11 AEGDGKMHITLCDFIVPWDTLSTTQKKSLNHRYQMGCECKITRCPMIPCYISSPDECLWM 120 130 140 150 160 170 180 190 200 210 220 pF1KE1 DWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP ::. :... :.::. ..:.:. ::.:.:::: : ..::.:: .: CCDS11 DWVTEKNINGHQAKFFACIKRSDGSCAWYRGAAPPKQEFLDIEDP 180 190 200 210 220 >>CCDS13911.1 TIMP3 gene_id:7078|Hs108|chr22 (211 aa) initn: 688 init1: 392 opt: 706 Z-score: 847.2 bits: 163.9 E(32554): 7.2e-41 Smith-Waterman score: 706; 47.4% identity (73.5% similar) in 215 aa overlap (11-224:4-211) 10 20 30 40 50 pF1KE1 MPGSPRPAPSWVLLLRLLALLRPPGLG-EACSCAPAHPQQHICHSALVIRAKISSEKVVP :. :. ::. : :::.:.:.:::. .:.: .:::::. ..:.: CCDS13 MTPWLGLIVLLGSWSLGDWGAEACTCSPSHPQDAFCNSDIVIRAKVVGKKLVK 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 ASADPADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEANSQKQYLLTGQ . : : : : :::.::..:: :. ::::.: . ::::.:::.: . ::::::. CCDS13 EG--PFGT---LVYTIKQMKMYRGFTKMPHVQYIHTEASESLCGLKLEVN-KYQYLLTGR 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 VLSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCGCQITTCYTVPCTISAPNECLWT : :::.. :::..: :..:.: ::..::..:::.:.:.: .:: .:: ... :::::: CCDS13 VY-DGKMYTGLCNFVERWDQLTLSQRKGLNYRYHLGCNCKIKSCYYLPCFVTSKNECLWT 110 120 130 140 150 160 180 190 200 210 220 pF1KE1 DWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP : : . :::..::.:... : :::::: : : ... ..: CCDS13 DMLSNFGYPGYQSKHYACIRQKGGYCSWYRGWAPPDKSIINATDP 170 180 190 200 210 >>CCDS14281.1 TIMP1 gene_id:7076|Hs108|chrX (207 aa) initn: 408 init1: 152 opt: 502 Z-score: 604.3 bits: 118.9 E(32554): 2.4e-27 Smith-Waterman score: 502; 37.4% identity (67.5% similar) in 206 aa overlap (7-207:6-199) 10 20 30 40 50 60 pF1KE1 MPGSPRPAPSWVLLLRLLALLRPPGLGEACSCAPAHPQQHICHSALVIRAKISSEKVVPA : : .::: : :. : ..::.:.: ::: .:.: ::::::. . : CCDS14 MAPFEPLASGILLL--LWLIAP---SRACTCVPPHPQTAFCNSDLVIRAKFVGTPEV-- 10 20 30 40 50 70 80 90 100 110 pF1KE1 SADPADTEKMLRYEIKQIKMFKGFEKV---KDVQYIYTPFDSSLCGVKLEA-NSQKQYLL .: . :::::. ::.:::. . :....::: :.:: .. : ....:. CCDS14 ----NQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLI 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 TGQVLSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCG-CQITTCYTVPCTISAPNE .:. :.:: . : :... ::..:::.::..... : ..: : . : ..:: ... .. CCDS14 AGK-LQDGLLHITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTH 110 120 130 140 150 160 180 190 200 210 220 pF1KE1 CLWTDWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP ::::: ::. . :.:..: .:. . : :.: CCDS14 CLWTDQLLQGSEKGFQSRHLACLPREPGLCTWQSLRSQIA 170 180 190 200 224 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:32:08 2016 done: Mon Nov 7 15:32:08 2016 Total Scan time: 1.990 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]