Result of FASTA (omim) for
pFN21AE5207
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5207, 178 aa
1>>>pF1KE5207 178 - 178 aa - 178 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8064+/-0.000314; mu= -3.1987+/- 0.020
mean_var=168.2004+/-33.399, 0's: 0 Z-trim(121.5): 31 B-trim: 0 in 0/62
Lambda= 0.098892
statistics sampled from 38122 (38167) to 38122 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.448), width: 16
Scan time: 5.550
The best scores are: opt bits E(85289)
NP_659003 (OMIM: 606669) FXYD domain-containing io ( 178) 1185 180.0 1.8e-45
NP_001158077 (OMIM: 606669) FXYD domain-containing ( 178) 1185 180.0 1.8e-45
NP_054883 (OMIM: 606669) FXYD domain-containing io ( 178) 1185 180.0 1.8e-45
NP_001307841 (OMIM: 606669) FXYD domain-containing ( 194) 1075 164.3 1e-40
NP_001307842 (OMIM: 606669) FXYD domain-containing ( 147) 552 89.6 2.4e-18
>>NP_659003 (OMIM: 606669) FXYD domain-containing ion tr (178 aa)
initn: 1185 init1: 1185 opt: 1185 Z-score: 937.3 bits: 180.0 E(85289): 1.8e-45
Smith-Waterman score: 1185; 99.4% identity (100.0% similar) in 178 aa overlap (1-178:1-178)
10 20 30 40 50 60
pF1KE5 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 PTWPADETPQPQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 PTWPADETPQPQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTD
70 80 90 100 110 120
130 140 150 160 170
pF1KE5 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCRQLSRLCRNHCR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
NP_659 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCRQLSRLCRNRCR
130 140 150 160 170
>>NP_001158077 (OMIM: 606669) FXYD domain-containing ion (178 aa)
initn: 1185 init1: 1185 opt: 1185 Z-score: 937.3 bits: 180.0 E(85289): 1.8e-45
Smith-Waterman score: 1185; 99.4% identity (100.0% similar) in 178 aa overlap (1-178:1-178)
10 20 30 40 50 60
pF1KE5 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 PTWPADETPQPQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTWPADETPQPQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTD
70 80 90 100 110 120
130 140 150 160 170
pF1KE5 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCRQLSRLCRNHCR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
NP_001 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCRQLSRLCRNRCR
130 140 150 160 170
>>NP_054883 (OMIM: 606669) FXYD domain-containing ion tr (178 aa)
initn: 1185 init1: 1185 opt: 1185 Z-score: 937.3 bits: 180.0 E(85289): 1.8e-45
Smith-Waterman score: 1185; 99.4% identity (100.0% similar) in 178 aa overlap (1-178:1-178)
10 20 30 40 50 60
pF1KE5 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 PTWPADETPQPQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 PTWPADETPQPQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTD
70 80 90 100 110 120
130 140 150 160 170
pF1KE5 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCRQLSRLCRNHCR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
NP_054 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCRQLSRLCRNRCR
130 140 150 160 170
>>NP_001307841 (OMIM: 606669) FXYD domain-containing ion (194 aa)
initn: 1075 init1: 1075 opt: 1075 Z-score: 851.9 bits: 164.3 E(85289): 1e-40
Smith-Waterman score: 1075; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)
10 20 30 40 50 60
pF1KE5 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 PTWPADETPQPQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTWPADETPQPQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTD
70 80 90 100 110 120
130 140 150 160 170
pF1KE5 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCRQLSRLCRNHCR
:::::::::::::::::::::::::::::::::::::::::::
NP_001 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSENWGWVGRTPRPGGGLM
130 140 150 160 170 180
NP_001 TEGWVLKGPWAILF
190
>>NP_001307842 (OMIM: 606669) FXYD domain-containing ion (147 aa)
initn: 563 init1: 545 opt: 552 Z-score: 450.5 bits: 89.6 E(85289): 2.4e-18
Smith-Waterman score: 906; 82.0% identity (82.6% similar) in 178 aa overlap (1-178:1-147)
10 20 30 40 50 60
pF1KE5 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 PTWPADETPQPQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTD
:::::: :::::::::::::::::::::::
NP_001 PTWPAD-------------------------------AHPTDDTTTLSERPSPSTDVQTD
70 80
130 140 150 160 170
pF1KE5 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCRQLSRLCRNHCR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
NP_001 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCRQLSRLCRNRCR
90 100 110 120 130 140
178 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:30:44 2016 done: Mon Nov 7 22:30:45 2016
Total Scan time: 5.550 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]