FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1109, 111 aa 1>>>pF1KE1109 111 - 111 aa - 111 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3530+/-0.000535; mu= 7.4028+/- 0.033 mean_var=108.3097+/-20.930, 0's: 0 Z-trim(117.6): 23 B-trim: 0 in 0/54 Lambda= 0.123237 statistics sampled from 18372 (18396) to 18372 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.87), E-opt: 0.2 (0.565), width: 16 Scan time: 1.790 The best scores are: opt bits E(32554) CCDS59525.1 XAGE2 gene_id:9502|Hs108|chrX ( 111) 773 146.0 4.4e-36 CCDS14347.1 XAGE3 gene_id:170626|Hs108|chrX ( 111) 570 110.0 3.2e-25 CCDS14346.1 XAGE5 gene_id:170627|Hs108|chrX ( 108) 508 98.9 6.5e-22 CCDS78483.1 GAGE10 gene_id:102724473|Hs108|chrX ( 116) 331 67.5 2e-12 CCDS43950.1 GAGE1 gene_id:2543|Hs108|chrX ( 117) 314 64.5 1.7e-11 CCDS48114.1 GAGE2A gene_id:729447|Hs108|chrX ( 116) 306 63.0 4.5e-11 CCDS43948.1 GAGE12H gene_id:729442|Hs108|chrX ( 117) 300 62.0 9.4e-11 >>CCDS59525.1 XAGE2 gene_id:9502|Hs108|chrX (111 aa) initn: 773 init1: 773 opt: 773 Z-score: 761.3 bits: 146.0 E(32554): 4.4e-36 Smith-Waterman score: 773; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111) 10 20 30 40 50 60 pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV 70 80 90 100 110 >>CCDS14347.1 XAGE3 gene_id:170626|Hs108|chrX (111 aa) initn: 570 init1: 570 opt: 570 Z-score: 566.3 bits: 110.0 E(32554): 3.2e-25 Smith-Waterman score: 570; 72.1% identity (87.4% similar) in 111 aa overlap (1-111:1-111) 10 20 30 40 50 60 pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE : ::::::::::::::. :::::: :::: ::::..:.:::.::.:.: :.::.:::::: CCDS14 MIWRGRSTYRPRPRRSVPPPELIGPMLEPGDEEPQQEEPPTESRDPAPGQEREEDQGAAE 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV :::::::::::: :.::: : .: : .::::::.:.:::::.:. . :: CCDS14 TQVPDLEADLQELSQSKTGGECGNGPDDQGKILPKSEQFKMPEGGDRQPQV 70 80 90 100 110 >>CCDS14346.1 XAGE5 gene_id:170627|Hs108|chrX (108 aa) initn: 560 init1: 471 opt: 508 Z-score: 506.9 bits: 98.9 E(32554): 6.5e-22 Smith-Waterman score: 508; 67.6% identity (83.8% similar) in 111 aa overlap (1-111:1-108) 10 20 30 40 50 60 pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEPTDEEPKEEKPPTKSRNPTPDQKREDDQGAAE :::::: : :::: :. .:.: ::::. ::..:.:::.:.. :: ::::::::::: CCDS14 MSWRGR---RYRPRRCLRLAQLVGPMLEPSVPEPQQEEPPTESQDHTPGQKREDDQGAAE 10 20 30 40 50 70 80 90 100 110 pF1KE1 IQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV ::::.:::::::: :.:::: : . ::.::::::.:.:::::.:::: :. CCDS14 IQVPNLEADLQELSQSKTGDECGDSPDVQGKILPKSEQFKMPEGGEGKPQL 60 70 80 90 100 >>CCDS78483.1 GAGE10 gene_id:102724473|Hs108|chrX (116 aa) initn: 317 init1: 169 opt: 331 Z-score: 336.4 bits: 67.5 E(32554): 2e-12 Smith-Waterman score: 331; 49.1% identity (64.7% similar) in 116 aa overlap (1-110:1-115) 10 20 30 40 50 pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEP--TDE----EPKEEKPPTKSRNPTPDQKRED ::::::::::::::: ..:::.:: :: .:: :.: .: :. ..:. :. :: CCDS78 MSWRGRSTYRPRPRRYVEPPEMIGPMLPEQFSDEVEPATPEEGEPATQRQDPAAAQEGED 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 DQGAAEIQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV . ::. : : ::: :: . ::: : : : . ::. :. : :: :: .:: CCDS78 E-GASAGQGPKPEADSQEQVHPKTGCECGDGPDGQEMGLPNPEEVKRPEEGEKQSQC 70 80 90 100 110 >>CCDS43950.1 GAGE1 gene_id:2543|Hs108|chrX (117 aa) initn: 248 init1: 167 opt: 314 Z-score: 320.0 bits: 64.5 E(32554): 1.7e-11 Smith-Waterman score: 314; 48.3% identity (64.4% similar) in 118 aa overlap (1-110:1-116) 10 20 30 40 50 pF1KE1 MSWRGRSTYR-PRPRRSLQPPELIGAMLEP---TDE----EPKEEKPPTKSRNPTPDQKR ::::::::: ::::: .::::.:: : .: .:: :.: .: :. ..:. :. CCDS43 MSWRGRSTYYWPRPRRYVQPPEMIGPM-RPEQFSDEVEPATPEEGEPATQRQDPAAAQEG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 EDDQGAAEIQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV ::. ::. : : ::: :: . .:: :: : : . :. :. : :: :::.:: CCDS43 EDE-GASAGQGPKPEADSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEGQSQC 60 70 80 90 100 110 >>CCDS48114.1 GAGE2A gene_id:729447|Hs108|chrX (116 aa) initn: 306 init1: 164 opt: 306 Z-score: 312.3 bits: 63.0 E(32554): 4.5e-11 Smith-Waterman score: 306; 46.2% identity (64.1% similar) in 117 aa overlap (1-110:1-115) 10 20 30 40 50 pF1KE1 MSWRGRSTYRPRPRRSLQPPELIGAMLEP---TDE----EPKEEKPPTKSRNPTPDQKRE ::::::::::::::: ..:::.:: : .: .:: :.: .: :. ..:. :. . CCDS48 MSWRGRSTYRPRPRRYVEPPEMIGPM-RPEQFSDEVEPATPEEGEPATQRQDPAAAQEGQ 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DDQGAAEIQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV :. ::. : : :: :: . .:: :: : : . :. :. : :: :: .:: CCDS48 DE-GASAGQGPKPEAHSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC 60 70 80 90 100 110 >>CCDS43948.1 GAGE12H gene_id:729442|Hs108|chrX (117 aa) initn: 221 init1: 140 opt: 300 Z-score: 306.5 bits: 62.0 E(32554): 9.4e-11 Smith-Waterman score: 300; 47.5% identity (62.7% similar) in 118 aa overlap (1-110:1-116) 10 20 30 40 50 pF1KE1 MSWRGRSTYR-PRPRRSLQPPELIGAMLEP---TDE----EPKEEKPPTKSRNPTPDQKR ::::::::: ::::: .::::.:: : .: .:: :.: .: :. ..:. :: CCDS43 MSWRGRSTYYWPRPRRYVQPPEMIGPM-RPEQFSDEVEPATPEEGEPATQCQDPAAAQKG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 EDDQGAAEIQVPDLEADLQELCQTKTGDGCEGGTDVKGKILPKAEHFKMPEAGEGKSQV ::. ::. : : :: :: . .:: :: : : . :. :. : :: :: .:: CCDS43 EDE-GASAGQGPKPEAHSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC 60 70 80 90 100 110 111 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:08:17 2016 done: Sun Nov 6 23:08:18 2016 Total Scan time: 1.790 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]