FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1591, 462 aa 1>>>pF1KE1591 462 - 462 aa - 462 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.6386+/-0.000273; mu= 9.8483+/- 0.017 mean_var=171.1966+/-34.447, 0's: 0 Z-trim(123.6): 401 B-trim: 0 in 0/60 Lambda= 0.098023 statistics sampled from 43393 (43812) to 43393 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.514), width: 16 Scan time: 8.380 The best scores are: opt bits E(85289) XP_005257611 (OMIM: 180240,612376) PREDICTED: reti ( 462) 3167 459.3 9.6e-129 NP_000955 (OMIM: 180240,612376) retinoic acid rece ( 462) 3167 459.3 9.6e-129 XP_005257610 (OMIM: 180240,612376) PREDICTED: reti ( 462) 3167 459.3 9.6e-129 NP_001138773 (OMIM: 180240,612376) retinoic acid r ( 462) 3167 459.3 9.6e-129 XP_011523397 (OMIM: 180240,612376) PREDICTED: reti ( 462) 3167 459.3 9.6e-129 NP_001019980 (OMIM: 180240,612376) retinoic acid r ( 457) 2754 400.9 3.6e-111 XP_005257609 (OMIM: 180240,612376) PREDICTED: reti ( 478) 2749 400.2 6.2e-111 XP_011523398 (OMIM: 180240,612376) PREDICTED: reti ( 404) 2735 398.2 2.1e-110 NP_001277145 (OMIM: 180220,615524) retinoic acid r ( 455) 2426 354.5 3.3e-97 XP_016880409 (OMIM: 180240,612376) PREDICTED: reti ( 343) 2308 337.8 2.9e-92 NP_001277229 (OMIM: 180220,615524) retinoic acid r ( 405) 2228 326.5 8.2e-89 NP_000956 (OMIM: 180220,615524) retinoic acid rece ( 448) 2227 326.4 9.8e-89 NP_001277195 (OMIM: 180220,615524) retinoic acid r ( 399) 2225 326.1 1.1e-88 NP_000957 (OMIM: 180190) retinoic acid receptor ga ( 454) 2167 317.9 3.5e-86 NP_001036193 (OMIM: 180190) retinoic acid receptor ( 443) 2134 313.2 8.8e-85 NP_001230659 (OMIM: 180190) retinoic acid receptor ( 382) 2068 303.9 5.1e-82 NP_001138774 (OMIM: 180240,612376) retinoic acid r ( 365) 2035 299.2 1.3e-80 NP_001230661 (OMIM: 180190) retinoic acid receptor ( 432) 1831 270.4 6.9e-72 NP_001277205 (OMIM: 180220,615524) retinoic acid r ( 336) 1828 269.9 7.6e-72 NP_001277146 (OMIM: 180220,615524) retinoic acid r ( 336) 1828 269.9 7.6e-72 NP_057236 (OMIM: 180220,615524) retinoic acid rece ( 336) 1828 269.9 7.6e-72 NP_001230660 (OMIM: 180190) retinoic acid receptor ( 333) 1731 256.2 1e-67 NP_001277206 (OMIM: 180220,615524) retinoic acid r ( 402) 1270 191.0 5e-48 NP_068811 (OMIM: 180246) retinoic acid receptor RX ( 533) 724 113.9 1.1e-24 XP_005246679 (OMIM: 168600,601828) PREDICTED: nucl ( 535) 723 113.8 1.2e-24 NP_006177 (OMIM: 168600,601828) nuclear receptor s ( 598) 723 113.8 1.3e-24 XP_016859708 (OMIM: 168600,601828) PREDICTED: nucl ( 598) 723 113.8 1.3e-24 XP_005246678 (OMIM: 168600,601828) PREDICTED: nucl ( 609) 723 113.8 1.3e-24 NP_001278849 (OMIM: 180245) retinoic acid receptor ( 435) 713 112.3 2.7e-24 NP_002948 (OMIM: 180245) retinoic acid receptor RX ( 462) 713 112.3 2.8e-24 XP_016866665 (OMIM: 180246) PREDICTED: retinoic ac ( 414) 712 112.1 2.9e-24 NP_001257330 (OMIM: 180246) retinoic acid receptor ( 537) 712 112.2 3.5e-24 NP_001278850 (OMIM: 180245) retinoic acid receptor ( 365) 701 110.5 7.7e-24 XP_005249335 (OMIM: 180246) PREDICTED: retinoic ac ( 441) 682 107.9 5.7e-23 NP_008912 (OMIM: 600542,612237) nuclear receptor s ( 626) 684 108.3 6.1e-23 XP_016870651 (OMIM: 600542,612237) PREDICTED: nucl ( 626) 684 108.3 6.1e-23 NP_775292 (OMIM: 600542,612237) nuclear receptor s ( 637) 684 108.3 6.2e-23 XP_006719426 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 674 106.9 1.6e-22 XP_006719427 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 674 106.9 1.6e-22 NP_002126 (OMIM: 139139) nuclear receptor subfamil ( 598) 674 106.9 1.6e-22 XP_005268881 (OMIM: 139139) PREDICTED: nuclear rec ( 598) 674 106.9 1.6e-22 NP_775180 (OMIM: 139139) nuclear receptor subfamil ( 598) 674 106.9 1.6e-22 XP_016874736 (OMIM: 139139) PREDICTED: nuclear rec ( 602) 674 106.9 1.6e-22 NP_001189162 (OMIM: 139139) nuclear receptor subfa ( 611) 674 106.9 1.6e-22 NP_001189163 (OMIM: 139139) nuclear receptor subfa ( 652) 674 106.9 1.7e-22 XP_005268879 (OMIM: 139139) PREDICTED: nuclear rec ( 670) 674 106.9 1.7e-22 NP_001278918 (OMIM: 180246) retinoic acid receptor ( 347) 663 105.1 3.1e-22 XP_011513098 (OMIM: 180246) PREDICTED: retinoic ac ( 420) 663 105.2 3.5e-22 XP_016856131 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 645 102.7 2.1e-21 XP_016856135 (OMIM: 602969) PREDICTED: estrogen-re ( 435) 645 102.7 2.1e-21 >>XP_005257611 (OMIM: 180240,612376) PREDICTED: retinoic (462 aa) initn: 3167 init1: 3167 opt: 3167 Z-score: 2432.3 bits: 459.3 E(85289): 9.6e-129 Smith-Waterman score: 3167; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462) 10 20 30 40 50 60 pF1KE1 MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPAT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 IETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 EFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 GFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 VYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGL 370 380 390 400 410 420 430 440 450 460 pF1KE1 DTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP :::::::::::::::::::::::::::::::::::::::::: XP_005 DTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP 430 440 450 460 >>NP_000955 (OMIM: 180240,612376) retinoic acid receptor (462 aa) initn: 3167 init1: 3167 opt: 3167 Z-score: 2432.3 bits: 459.3 E(85289): 9.6e-129 Smith-Waterman score: 3167; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462) 10 20 30 40 50 60 pF1KE1 MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPAT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 IETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 TPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 EFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 EFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 GFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 GFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 VYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 VYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGL 370 380 390 400 410 420 430 440 450 460 pF1KE1 DTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP :::::::::::::::::::::::::::::::::::::::::: NP_000 DTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP 430 440 450 460 >>XP_005257610 (OMIM: 180240,612376) PREDICTED: retinoic (462 aa) initn: 3167 init1: 3167 opt: 3167 Z-score: 2432.3 bits: 459.3 E(85289): 9.6e-129 Smith-Waterman score: 3167; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462) 10 20 30 40 50 60 pF1KE1 MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPAT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 IETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 EFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 GFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 VYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGL 370 380 390 400 410 420 430 440 450 460 pF1KE1 DTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP :::::::::::::::::::::::::::::::::::::::::: XP_005 DTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP 430 440 450 460 >>NP_001138773 (OMIM: 180240,612376) retinoic acid recep (462 aa) initn: 3167 init1: 3167 opt: 3167 Z-score: 2432.3 bits: 459.3 E(85289): 9.6e-129 Smith-Waterman score: 3167; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462) 10 20 30 40 50 60 pF1KE1 MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPAT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 EFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 GFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 VYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGL 370 380 390 400 410 420 430 440 450 460 pF1KE1 DTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP :::::::::::::::::::::::::::::::::::::::::: NP_001 DTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP 430 440 450 460 >>XP_011523397 (OMIM: 180240,612376) PREDICTED: retinoic (462 aa) initn: 3167 init1: 3167 opt: 3167 Z-score: 2432.3 bits: 459.3 E(85289): 9.6e-129 Smith-Waterman score: 3167; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462) 10 20 30 40 50 60 pF1KE1 MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPAT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYTL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 EFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 GFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 VYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGL 370 380 390 400 410 420 430 440 450 460 pF1KE1 DTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP :::::::::::::::::::::::::::::::::::::::::: XP_011 DTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP 430 440 450 460 >>NP_001019980 (OMIM: 180240,612376) retinoic acid recep (457 aa) initn: 2738 init1: 2738 opt: 2754 Z-score: 2116.7 bits: 400.9 E(85289): 3.6e-111 Smith-Waterman score: 2754; 91.4% identity (93.6% similar) in 454 aa overlap (9-462:10-457) 10 20 30 40 50 pF1KE1 MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPA :::. . . : ..: :: :: .: . :. . :. : NP_001 MYESVEVGGPTPNPFLVVDFYNQNRACLLPE--KGLPAPGPYST-PLRTPLWNGSNHS-- 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 TIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 -IETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKN 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 MVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESYT 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 LTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKT 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 VEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE1 AGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEAL 300 310 320 330 340 350 360 370 380 390 400 410 pF1KE1 KVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 360 370 380 390 400 410 420 430 440 450 460 pF1KE1 LDTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP ::::::::::::::::::::::::::::::::::::::::::: NP_001 LDTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP 420 430 440 450 >>XP_005257609 (OMIM: 180240,612376) PREDICTED: retinoic (478 aa) initn: 2736 init1: 2736 opt: 2749 Z-score: 2112.7 bits: 400.2 E(85289): 6.2e-111 Smith-Waterman score: 2749; 93.0% identity (94.8% similar) in 443 aa overlap (23-462:36-478) 10 20 30 40 50 pF1KE1 MASNSSSCPTPGGGHLNGYPVPPYAFFF-PPMLGGLSPPGALTTLQHQLPVS ::: : : : : .: . : . XP_005 MTQAGVSFRHSVRAAQCHTRVPNTWPRATRPYASCRRSPRLRGRWPGSAGQGAGGRAPRA 10 20 30 40 50 60 60 70 80 90 100 pF1KE1 GYSTP--SPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK :. . . ..::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GWRAGDVTGSAIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCK 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE1 GFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEV 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE1 PKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFS 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE1 ELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDG 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE1 LTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVD 310 320 330 340 350 360 350 360 370 380 390 400 pF1KE1 MLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPL 370 380 390 400 410 420 410 420 430 440 450 460 pF1KE1 IQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 IQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP 430 440 450 460 470 >>XP_011523398 (OMIM: 180240,612376) PREDICTED: retinoic (404 aa) initn: 2735 init1: 2735 opt: 2735 Z-score: 2102.9 bits: 398.2 E(85289): 2.1e-110 Smith-Waterman score: 2735; 100.0% identity (100.0% similar) in 402 aa overlap (61-462:3-404) 40 50 60 70 80 90 pF1KE1 MLGGLSPPGALTTLQHQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFV :::::::::::::::::::::::::::::: XP_011 MPIETQSSSSEEIVPSPPSPPPLPRIYKPCFV 10 20 30 100 110 120 130 140 150 pF1KE1 CQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFE 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE1 VGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTT 100 110 120 130 140 150 220 230 240 250 260 270 pF1KE1 NNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILI 160 170 180 190 200 210 280 290 300 310 320 330 pF1KE1 LRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLS 220 230 240 250 260 270 340 350 360 370 380 390 pF1KE1 AICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAK 280 290 300 310 320 330 400 410 420 430 440 450 pF1KE1 GAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLSP 340 350 360 370 380 390 460 pF1KE1 SSNRSSPATHSP :::::::::::: XP_011 SSNRSSPATHSP 400 >>NP_001277145 (OMIM: 180220,615524) retinoic acid recep (455 aa) initn: 2459 init1: 2282 opt: 2426 Z-score: 1866.1 bits: 354.5 E(85289): 3.3e-97 Smith-Waterman score: 2452; 78.0% identity (90.1% similar) in 464 aa overlap (1-462:1-452) 10 20 30 40 50 pF1KE1 MASNSSSCPTPG-GGHLNGYPVPPYAFFFPPMLGGLS-PPGALTTLQHQLPVSGYSTPSP :.... .::.:. .::.. ::. :: ..:::..:::: :: : :. . : :: ::::: NP_001 MTTSGHACPVPAVNGHMTHYPATPYPLLFPPVIGGLSLPP--LHGLHGHPPPSGCSTPSP 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 ATIETQSSSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQK :::::::.::::.::::::: : ::.:::::::::::::::::::::::::::::::::: NP_001 ATIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQK 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 NMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEVPKPECSESY ::.:::::::::.:::::::::::::::::::::::::::::::::::::. : ::.::: NP_001 NMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESY 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 TLTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIK .: :. .: ::.:::::::::.::::::::::.:...:: ::. ::::::::.:::::: NP_001 EMTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIK 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 TVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH :::::.::::: ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMH 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE1 NAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEA ::::::::::::.::::::::::::.:::::::::::::::::::.: .:: :::::::: NP_001 NAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEA 300 310 320 330 340 350 360 370 380 390 400 410 pF1KE1 LKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSE ::.:.::::::.::::::.::::::::::::::::::::::::::::::::::::::::: NP_001 LKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSE 360 370 380 390 400 410 420 430 440 450 460 pF1KE1 GLDTLSGQPGGGGRDGGGLAPPPGSCSPSLSPSSNRSSPATHSP : . :. :...: . :::.:::: ..: ...:: NP_001 GHEPLT--PSSSGNTA--------EHSPSISPSSVENSGVSQSPLVQ 420 430 440 450 >>XP_016880409 (OMIM: 180240,612376) PREDICTED: retinoic (343 aa) initn: 2308 init1: 2308 opt: 2308 Z-score: 1777.5 bits: 337.8 E(85289): 2.9e-92 Smith-Waterman score: 2308; 100.0% identity (100.0% similar) in 343 aa overlap (120-462:1-343) 90 100 110 120 130 140 pF1KE1 VCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCF :::::::::::::::::::::::::::::: XP_016 MVYTCHRDKNCIINKVTRNRCQYCRLQKCF 10 20 30 150 160 170 180 190 200 pF1KE1 EVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EVGMSKESVRNDRNKKKKEVPKPECSESYTLTPEVGELIEKVRKAHQETFPALCQLGKYT 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE1 TNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL 100 110 120 130 140 150 270 280 290 300 310 320 pF1KE1 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLL 160 170 180 190 200 210 330 340 350 360 370 380 pF1KE1 SAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISA 220 230 240 250 260 270 390 400 410 420 430 440 pF1KE1 KGAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KGAERVITLKMEIPGSMPPLIQEMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSPSLS 280 290 300 310 320 330 450 460 pF1KE1 PSSNRSSPATHSP ::::::::::::: XP_016 PSSNRSSPATHSP 340 462 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:10:29 2016 done: Sun Nov 6 23:10:30 2016 Total Scan time: 8.380 Total Display time: 0.070 Function used was FASTA [36.3.4 Apr, 2011]