FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9664, 464 aa
  1>>>pF1KE9664 464 - 464 aa - 464 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.1148+/-0.00149; mu= -9.3922+/- 0.087
 mean_var=310.7887+/-63.476, 0's: 0 Z-trim(105.9): 49  B-trim: 71 in 1/52
 Lambda= 0.072751
 statistics sampled from 8638 (8653) to 8638 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.266), width:  16
 Scan time:  3.120

The best scores are:                                      opt bits E(32554)
CCDS1245.1 NUF2 gene_id:83540|Hs108|chr1           ( 464) 2966 325.6 6.8e-89


>>CCDS1245.1 NUF2 gene_id:83540|Hs108|chr1                (464 aa)
 initn: 2966 init1: 2966 opt: 2966  Z-score: 1709.4  bits: 325.6 E(32554): 6.8e-89
Smith-Waterman score: 2966; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)

               10        20        30        40        50        60
pF1KE9 METLSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 METLSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 LEHFYMMPVNSEVMYPHLMEGFLPFSNLVTHLDSFLPICRVNDFETADILCPKAKRTSRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LEHFYMMPVNSEVMYPHLMEGFLPFSNLVTHLDSFLPICRVNDFETADILCPKAKRTSRF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 LSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLDSVPVEEQEEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLDSVPVEEQEEF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 KQLSDGIQELQQSLNQDFHQKTIVLQEGNSQKKSNISEKTKRLNELKLSVVSLKEIQESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KQLSDGIQELQQSLNQDFHQKTIVLQEGNSQKKSNISEKTKRLNELKLSVVSLKEIQESL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 KTKIVDSPEKLKNYKEKMKDTVQKLKNARQEVVEKYEIYGDSVDCLPSCQLEVQLYQKKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KTKIVDSPEKLKNYKEKMKDTVQKLKNARQEVVEKYEIYGDSVDCLPSCQLEVQLYQKKI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 QDLSDNREKLASILKESLNLEDQIESDESELKKLKTEENSFKRLMIVKKEKLATAQFKIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QDLSDNREKLASILKESLNLEDQIESDESELKKLKTEENSFKRLMIVKKEKLATAQFKIN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 KKHEDVKQYKRTVIEDCNKVQEKRGAVYERVTTINQEIQKIKLGIQQLKDAAEREKLKSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KKHEDVKQYKRTVIEDCNKVQEKRGAVYERVTTINQEIQKIKLGIQQLKDAAEREKLKSQ
              370       380       390       400       410       420

              430       440       450       460    
pF1KE9 EIFLNLKTALEKYHDGIEKAAEDSYAKIDEKTAELKRKMFKMST
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EIFLNLKTALEKYHDGIEKAAEDSYAKIDEKTAELKRKMFKMST
              430       440       450       460    




464 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:11:03 2016 done: Sun Nov  6 23:11:03 2016
 Total Scan time:  3.120 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]