FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4411, 424 aa 1>>>pF1KE4411 424 - 424 aa - 424 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.0299+/- 0.001; mu= 0.6455+/- 0.060 mean_var=203.1238+/-40.141, 0's: 0 Z-trim(111.2): 11 B-trim: 28 in 1/51 Lambda= 0.089990 statistics sampled from 12182 (12188) to 12182 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.374), width: 16 Scan time: 3.230 The best scores are: opt bits E(32554) CCDS1929.1 STAMBP gene_id:10617|Hs108|chr2 ( 424) 2818 378.4 7.3e-105 CCDS7391.1 STAMBPL1 gene_id:57559|Hs108|chr10 ( 436) 1627 223.8 2.6e-58 >>CCDS1929.1 STAMBP gene_id:10617|Hs108|chr2 (424 aa) initn: 2818 init1: 2818 opt: 2818 Z-score: 1996.1 bits: 378.4 E(32554): 7.3e-105 Smith-Waterman score: 2818; 100.0% identity (100.0% similar) in 424 aa overlap (1-424:1-424) 10 20 30 40 50 60 pF1KE4 MSDHGDVSLPPEDRVRALSQLGSAVEVNEDIPPRRYFRSGVEIIRMASIYSEEGNIEHAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 MSDHGDVSLPPEDRVRALSQLGSAVEVNEDIPPRRYFRSGVEIIRMASIYSEEGNIEHAF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 ILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAELLKRYTKEYTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 ILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAELLKRYTKEYTE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 YNEEKKKEAEELARNMAIQQELEKEKQRVAQQKQQQLEQEQFHAFEEMIRNQELEKERLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 YNEEKKKEAEELARNMAIQQELEKEKQRVAQQKQQQLEQEQFHAFEEMIRNQELEKERLK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 IVQEFGKVDPGLGGPLVPDLEKPSLDVFPTLTVSSIQPSDCHTTVRPAKPPVVDRSLKPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 IVQEFGKVDPGLGGPLVPDLEKPSLDVFPTLTVSSIQPSDCHTTVRPAKPPVVDRSLKPG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 ALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNEFTITHVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 ALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNEFTITHVL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 IPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 IPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 ESVAIVCSPKFQETGFFKLTDHGLEEISSCRQKGFHPHSKDPPLFCSCSHVTVVDRAVTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS19 ESVAIVCSPKFQETGFFKLTDHGLEEISSCRQKGFHPHSKDPPLFCSCSHVTVVDRAVTI 370 380 390 400 410 420 pF1KE4 TDLR :::: CCDS19 TDLR >>CCDS7391.1 STAMBPL1 gene_id:57559|Hs108|chr10 (436 aa) initn: 1653 init1: 920 opt: 1627 Z-score: 1160.3 bits: 223.8 E(32554): 2.6e-58 Smith-Waterman score: 1627; 55.8% identity (78.6% similar) in 430 aa overlap (1-424:16-436) 10 20 30 40 pF1KE4 MSDHGDVSLPPEDRVRALSQLGSAVEVNEDIPPRRYFRSGVEIIR : :: :::: ::.::::::.:: . ..::: ::::::::::. : CCDS73 MDQPFTVNSLKKLAAMPDHTDVSLSPEERVRALSKLGCNITISEDITPRRYFRSGVEMER 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 MASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEE :::.: ::::.:.::.::::.::::.::::.::::.. ..:::.: .:::::::::...: CCDS73 MASVYLEEGNLENAFVLYNKFITLFVEKLPNHRDYQQCAVPEKQDIMKKLKEIAFPRTDE 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE4 LKAELLKRYTKEYTEYNEEKKKEAEELARNMAIQQELEKEKQRVAQQKQQQLEQEQFHAF :: .:::.:. :: :: . :.: :. ... :. .: :..:.::..:::::.::: : CCDS73 LKNDLLKKYNVEYQEYLQSKNKYKAEILKKLEHQRLIEAERKRIAQMRQQQLESEQFLFF 130 140 150 160 170 180 170 180 190 200 210 pF1KE4 EEMIRNQELEKERLKIVQEFGKVDPGLGGPLVPDLEKPSLDVFPT------LTVSSIQPS :.....::: . ... : : : ... .:. : : :.: . ::. CCDS73 EDQLKKQELARGQMRSQQTSG---------LSEQIDGSALSCFSTHQNNSLLNVFADQPN 190 200 210 220 230 220 230 240 250 260 270 pF1KE4 DCHTTVRPAKPPVVDRSLKPGALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGV .: .. : :.:.: :.: .. . ...::: ::.: :: .::::: .::.::. CCDS73 KSDATNYASHSPPVNRALTPAATLSAVQNLVVEGLRCVVLPEDLCHKFLQLAESNTVRGI 240 250 260 270 280 290 280 290 300 310 320 330 pF1KE4 ETCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPT :::::::::: .::::::::..:::::: :::. :: :::: .:::. :.:::::::::: CCDS73 ETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPT 300 310 320 330 340 350 340 350 360 370 380 390 pF1KE4 QTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQETGFFKLTDHGLEEISSCRQKGFHPHS :::::::::::::::::.::::..::::::: ..::.:.::. :. :.:.:..::::::. CCDS73 QTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACKKKGFHPHT 360 370 380 390 400 410 400 410 420 pF1KE4 KDPPLFCSCSHVTVVDRAVTITDLR :.: :: :.:: : : . . ::: CCDS73 KEPRLFSICKHVLVKDIKIIVLDLR 420 430 424 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 01:17:26 2016 done: Sun Nov 6 01:17:27 2016 Total Scan time: 3.230 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]