FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3942, 433 aa 1>>>pF1KE3942 433 - 433 aa - 433 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0689+/-0.000881; mu= 15.3678+/- 0.052 mean_var=121.3492+/-25.705, 0's: 0 Z-trim(110.1): 56 B-trim: 432 in 1/50 Lambda= 0.116428 statistics sampled from 11345 (11396) to 11345 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.35), width: 16 Scan time: 3.470 The best scores are: opt bits E(32554) CCDS8419.1 RNF26 gene_id:79102|Hs108|chr11 ( 433) 2846 489.1 3.5e-138 >>CCDS8419.1 RNF26 gene_id:79102|Hs108|chr11 (433 aa) initn: 2846 init1: 2846 opt: 2846 Z-score: 2594.3 bits: 489.1 E(32554): 3.5e-138 Smith-Waterman score: 2846; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:1-433) 10 20 30 40 50 60 pF1KE3 MEAVYLVVNGLGLVLDVLTLVLDLNFLLVSSLLASLAWLLAFVYNLPHTVLTSLLHLGRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS84 MEAVYLVVNGLGLVLDVLTLVLDLNFLLVSSLLASLAWLLAFVYNLPHTVLTSLLHLGRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 VLLSLLALIEAVVRFTCGGLQALCTLLYSCCSGLESLKLLGHLASHGALRSREILHRGVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS84 VLLSLLALIEAVVRFTCGGLQALCTLLYSCCSGLESLKLLGHLASHGALRSREILHRGVL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 NVVSSGHALLRQACDICAIAMSLVAYVINSLVNICLIGTQNLFSLVLALWDAVTGPLWRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS84 NVVSSGHALLRQACDICAIAMSLVAYVINSLVNICLIGTQNLFSLVLALWDAVTGPLWRM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 TDVVAAFLAHISSSAVAMAILLWTPCQLALELLASAARLLASFVLVNLTGLVLLACVLAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS84 TDVVAAFLAHISSSAVAMAILLWTPCQLALELLASAARLLASFVLVNLTGLVLLACVLAV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 TVTVLHPDFTLRLATQALSQLHARPSYHRLREDVMRLSRLALGSEAWRRVWSRSLQLASW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS84 TVTVLHPDFTLRLATQALSQLHARPSYHRLREDVMRLSRLALGSEAWRRVWSRSLQLASW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 PNRGGAPGAPQGDPMRVFSVRTRRQDTLPEAGRRSEAEEEEARTIRVTPVRGRERLNEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS84 PNRGGAPGAPQGDPMRVFSVRTRRQDTLPEAGRRSEAEEEEARTIRVTPVRGRERLNEEE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 PPGGQDPWKLLKEQEERKKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS84 PPGGQDPWKLLKEQEERKKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPL 370 380 390 400 410 420 430 pF1KE3 CRRGILQTLNVYL ::::::::::::: CCDS84 CRRGILQTLNVYL 430 433 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:44:17 2016 done: Sun Nov 6 08:44:17 2016 Total Scan time: 3.470 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]