FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4556, 677 aa 1>>>pF1KE4556 677 - 677 aa - 677 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6003+/-0.000351; mu= 18.1989+/- 0.022 mean_var=70.8039+/-14.227, 0's: 0 Z-trim(115.5): 4 B-trim: 241 in 2/51 Lambda= 0.152421 statistics sampled from 26073 (26077) to 26073 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.306), width: 16 Scan time: 9.170 The best scores are: opt bits E(85289) NP_000395 (OMIM: 230500,230600,230650,253010,61145 ( 677) 4684 1039.3 0 NP_001303969 (OMIM: 230500,230600,230650,253010,61 ( 725) 4538 1007.2 0 NP_001073279 (OMIM: 230500,230600,230650,253010,61 ( 647) 4507 1000.4 0 NP_001129074 (OMIM: 230500,230600,230650,253010,61 ( 546) 3000 669.0 1.3e-191 >>NP_000395 (OMIM: 230500,230600,230650,253010,611458) b (677 aa) initn: 4684 init1: 4684 opt: 4684 Z-score: 5560.8 bits: 1039.3 E(85289): 0 Smith-Waterman score: 4684; 99.9% identity (99.9% similar) in 677 aa overlap (1-677:1-677) 10 20 30 40 50 60 pF1KE4 MPGFLVRILLLLLVLLLLGPTRGLRNATQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRV ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MPGFLVRILPLLLVLLLLGPTRGLRNATQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 PRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 PRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVIL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 RPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 RPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 ITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 ITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 DFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 DFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 ASVNLYMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 ASVNLYMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 PEGPIPPSTPKFAYGKVTLEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 PEGPIPPSTPKFAYGKVTLEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRT 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 TLPQDCSNPAPLSSPLNGVHDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDLLVENM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 TLPQDCSNPAPLSSPLNGVHDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDLLVENM 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 GRVNYGAYINDFKGLVSNLTLSSNILTDWTIFPLDTEDAVRSHLGGWGHRDSGHHDEAWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 GRVNYGAYINDFKGLVSNLTLSSNILTDWTIFPLDTEDAVRSHLGGWGHRDSGHHDEAWA 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE4 HNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 HNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLT 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE4 LFVPQHILMTSAPNTITVLELEWAPCSSDDPELCAVTFVDRPVIGSSVTYDHPSKPVEKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LFVPQHILMTSAPNTITVLELEWAPCSSDDPELCAVTFVDRPVIGSSVTYDHPSKPVEKR 610 620 630 640 650 660 670 pF1KE4 LMPPPPQKNKDSWLDHV ::::::::::::::::: NP_000 LMPPPPQKNKDSWLDHV 670 >>NP_001303969 (OMIM: 230500,230600,230650,253010,611458 (725 aa) initn: 4538 init1: 4538 opt: 4538 Z-score: 5386.8 bits: 1007.2 E(85289): 0 Smith-Waterman score: 4538; 100.0% identity (100.0% similar) in 652 aa overlap (26-677:74-725) 10 20 30 40 50 pF1KE4 MPGFLVRILLLLLVLLLLGPTRGLRNATQRMFEIDYSRDSFLKDGQPFRYISGSI :::::::::::::::::::::::::::::: NP_001 LPLHKRGTKTAPNEHASSNRSGRRRRRQQWNATQRMFEIDYSRDSFLKDGQPFRYISGSI 50 60 70 80 90 100 60 70 80 90 100 110 pF1KE4 HYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELG 110 120 130 140 150 160 120 130 140 150 160 170 pF1KE4 LLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQ 170 180 190 200 210 220 180 190 200 210 220 230 pF1KE4 NGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQG 230 240 250 260 270 280 240 250 260 270 280 290 pF1KE4 LYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYD 290 300 310 320 330 340 300 310 320 330 340 350 pF1KE4 ILARGASVNLYMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ILARGASVNLYMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQ 350 360 370 380 390 400 360 370 380 390 400 410 pF1KE4 KFEKVPEGPIPPSTPKFAYGKVTLEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KFEKVPEGPIPPSTPKFAYGKVTLEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGF 410 420 430 440 450 460 420 430 440 450 460 470 pF1KE4 VLYRTTLPQDCSNPAPLSSPLNGVHDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VLYRTTLPQDCSNPAPLSSPLNGVHDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDL 470 480 490 500 510 520 480 490 500 510 520 530 pF1KE4 LVENMGRVNYGAYINDFKGLVSNLTLSSNILTDWTIFPLDTEDAVRSHLGGWGHRDSGHH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LVENMGRVNYGAYINDFKGLVSNLTLSSNILTDWTIFPLDTEDAVRSHLGGWGHRDSGHH 530 540 550 560 570 580 540 550 560 570 580 590 pF1KE4 DEAWAHNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DEAWAHNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPAR 590 600 610 620 630 640 600 610 620 630 640 650 pF1KE4 GPQLTLFVPQHILMTSAPNTITVLELEWAPCSSDDPELCAVTFVDRPVIGSSVTYDHPSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GPQLTLFVPQHILMTSAPNTITVLELEWAPCSSDDPELCAVTFVDRPVIGSSVTYDHPSK 650 660 670 680 690 700 660 670 pF1KE4 PVEKRLMPPPPQKNKDSWLDHV :::::::::::::::::::::: NP_001 PVEKRLMPPPPQKNKDSWLDHV 710 720 >>NP_001073279 (OMIM: 230500,230600,230650,253010,611458 (647 aa) initn: 4507 init1: 4507 opt: 4507 Z-score: 5350.8 bits: 1000.4 E(85289): 0 Smith-Waterman score: 4507; 100.0% identity (100.0% similar) in 647 aa overlap (31-677:1-647) 10 20 30 40 50 60 pF1KE4 MPGFLVRILLLLLVLLLLGPTRGLRNATQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRV :::::::::::::::::::::::::::::: NP_001 MFEIDYSRDSFLKDGQPFRYISGSIHYSRV 10 20 30 70 80 90 100 110 120 pF1KE4 PRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVIL 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE4 RPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPV 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE4 ITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTV 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE4 DFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARG 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE4 ASVNLYMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ASVNLYMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKV 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE4 PEGPIPPSTPKFAYGKVTLEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PEGPIPPSTPKFAYGKVTLEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRT 340 350 360 370 380 390 430 440 450 460 470 480 pF1KE4 TLPQDCSNPAPLSSPLNGVHDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDLLVENM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TLPQDCSNPAPLSSPLNGVHDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDLLVENM 400 410 420 430 440 450 490 500 510 520 530 540 pF1KE4 GRVNYGAYINDFKGLVSNLTLSSNILTDWTIFPLDTEDAVRSHLGGWGHRDSGHHDEAWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GRVNYGAYINDFKGLVSNLTLSSNILTDWTIFPLDTEDAVRSHLGGWGHRDSGHHDEAWA 460 470 480 490 500 510 550 560 570 580 590 600 pF1KE4 HNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLT 520 530 540 550 560 570 610 620 630 640 650 660 pF1KE4 LFVPQHILMTSAPNTITVLELEWAPCSSDDPELCAVTFVDRPVIGSSVTYDHPSKPVEKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LFVPQHILMTSAPNTITVLELEWAPCSSDDPELCAVTFVDRPVIGSSVTYDHPSKPVEKR 580 590 600 610 620 630 670 pF1KE4 LMPPPPQKNKDSWLDHV ::::::::::::::::: NP_001 LMPPPPQKNKDSWLDHV 640 >>NP_001129074 (OMIM: 230500,230600,230650,253010,611458 (546 aa) initn: 3520 init1: 3000 opt: 3000 Z-score: 3560.9 bits: 669.0 E(85289): 1.3e-191 Smith-Waterman score: 3290; 77.4% identity (79.0% similar) in 677 aa overlap (1-677:1-546) 10 20 30 40 50 60 pF1KE4 MPGFLVRILLLLLVLLLLGPTRGLRNATQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRV ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPGFLVRILPLLLVLLLLGPTRGLRNATQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 PRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVIL :::::::::::::::::::::: ::. NP_001 PRFYWKDRLLKMKMAGLNAIQTL---------PGS------------------------- 70 80 130 140 150 160 170 180 pF1KE4 RPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPV :.. . : : : : . ...: NP_001 ------CGQ--VVGSP-------------SAQDEASPLSEW------------------- 90 100 190 200 210 220 230 240 pF1KE4 ITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTV . :.: NP_001 -----RASYNS------------------------------------------------- 110 250 260 270 280 290 300 pF1KE4 DFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARG .:::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ---AGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARG 120 130 140 150 160 310 320 330 340 350 360 pF1KE4 ASVNLYMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ASVNLYMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKV 170 180 190 200 210 220 370 380 390 400 410 420 pF1KE4 PEGPIPPSTPKFAYGKVTLEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PEGPIPPSTPKFAYGKVTLEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRT 230 240 250 260 270 280 430 440 450 460 470 480 pF1KE4 TLPQDCSNPAPLSSPLNGVHDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDLLVENM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TLPQDCSNPAPLSSPLNGVHDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDLLVENM 290 300 310 320 330 340 490 500 510 520 530 540 pF1KE4 GRVNYGAYINDFKGLVSNLTLSSNILTDWTIFPLDTEDAVRSHLGGWGHRDSGHHDEAWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GRVNYGAYINDFKGLVSNLTLSSNILTDWTIFPLDTEDAVRSHLGGWGHRDSGHHDEAWA 350 360 370 380 390 400 550 560 570 580 590 600 pF1KE4 HNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLT 410 420 430 440 450 460 610 620 630 640 650 660 pF1KE4 LFVPQHILMTSAPNTITVLELEWAPCSSDDPELCAVTFVDRPVIGSSVTYDHPSKPVEKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LFVPQHILMTSAPNTITVLELEWAPCSSDDPELCAVTFVDRPVIGSSVTYDHPSKPVEKR 470 480 490 500 510 520 670 pF1KE4 LMPPPPQKNKDSWLDHV ::::::::::::::::: NP_001 LMPPPPQKNKDSWLDHV 530 540 677 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:58:14 2016 done: Sat Nov 5 23:58:15 2016 Total Scan time: 9.170 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]