Result of FASTA (omim) for
pFN21AE1532
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1532, 122 aa
1>>>pF1KE1532 122 - 122 aa - 122 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7111+/-0.000287; mu= 13.3259+/- 0.018
mean_var=51.4218+/-10.474, 0's: 0 Z-trim(117.1): 10 B-trim: 1465 in 1/54
Lambda= 0.178855
statistics sampled from 28842 (28850) to 28842 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.338), width: 16
Scan time: 4.630
The best scores are: opt bits E(85289)
NP_001171477 (OMIM: 104750) serum amyloid A-1 prot ( 122) 831 221.4 2.8e-58
NP_000322 (OMIM: 104750) serum amyloid A-1 protein ( 122) 831 221.4 2.8e-58
NP_954630 (OMIM: 104750) serum amyloid A-1 protein ( 122) 831 221.4 2.8e-58
NP_110381 (OMIM: 104751) serum amyloid A-2 protein ( 122) 782 208.8 1.8e-54
NP_001120852 (OMIM: 104751) serum amyloid A-2 prot ( 83) 505 137.2 4.3e-33
NP_006503 (OMIM: 104752) serum amyloid A-4 protein ( 130) 477 130.1 9.4e-31
>>NP_001171477 (OMIM: 104750) serum amyloid A-1 protein (122 aa)
initn: 831 init1: 831 opt: 831 Z-score: 1167.2 bits: 221.4 E(85289): 2.8e-58
Smith-Waterman score: 831; 97.5% identity (100.0% similar) in 122 aa overlap (1-122:1-122)
10 20 30 40 50 60
pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAADEWGRSGKDPNHFRPAGLPE
:::::::::.::::.:::::::::::::::::::::::::.:::::::::::::::::::
NP_001 DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE
70 80 90 100 110 120
pF1KE1 KY
::
NP_001 KY
>>NP_000322 (OMIM: 104750) serum amyloid A-1 protein pre (122 aa)
initn: 831 init1: 831 opt: 831 Z-score: 1167.2 bits: 221.4 E(85289): 2.8e-58
Smith-Waterman score: 831; 97.5% identity (100.0% similar) in 122 aa overlap (1-122:1-122)
10 20 30 40 50 60
pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAADEWGRSGKDPNHFRPAGLPE
:::::::::.::::.:::::::::::::::::::::::::.:::::::::::::::::::
NP_000 DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE
70 80 90 100 110 120
pF1KE1 KY
::
NP_000 KY
>>NP_954630 (OMIM: 104750) serum amyloid A-1 protein pre (122 aa)
initn: 831 init1: 831 opt: 831 Z-score: 1167.2 bits: 221.4 E(85289): 2.8e-58
Smith-Waterman score: 831; 97.5% identity (100.0% similar) in 122 aa overlap (1-122:1-122)
10 20 30 40 50 60
pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAADEWGRSGKDPNHFRPAGLPE
:::::::::.::::.:::::::::::::::::::::::::.:::::::::::::::::::
NP_954 DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE
70 80 90 100 110 120
pF1KE1 KY
::
NP_954 KY
>>NP_110381 (OMIM: 104751) serum amyloid A-2 protein iso (122 aa)
initn: 782 init1: 782 opt: 782 Z-score: 1098.8 bits: 208.8 E(85289): 1.8e-54
Smith-Waterman score: 782; 91.8% identity (99.2% similar) in 122 aa overlap (1-122:1-122)
10 20 30 40 50 60
pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
NP_110 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAADEWGRSGKDPNHFRPAGLPE
:::::::::.::::.::.:::::::. :.:::::::::::..:::::.::::::::::::
NP_110 DAAKRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDPNHFRPAGLPE
70 80 90 100 110 120
pF1KE1 KY
::
NP_110 KY
>>NP_001120852 (OMIM: 104751) serum amyloid A-2 protein (83 aa)
initn: 505 init1: 505 opt: 505 Z-score: 715.1 bits: 137.2 E(85289): 4.3e-33
Smith-Waterman score: 505; 96.1% identity (100.0% similar) in 77 aa overlap (1-77:1-77)
10 20 30 40 50 60
pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 DAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAADEWGRSGKDPNHFRPAGLPE
:::::::::.::::.::
NP_001 DAAKRGPGGAWAAEVISLFSAEL
70 80
>>NP_006503 (OMIM: 104752) serum amyloid A-4 protein pre (130 aa)
initn: 477 init1: 312 opt: 477 Z-score: 673.1 bits: 130.1 E(85289): 9.4e-31
Smith-Waterman score: 477; 55.4% identity (81.5% similar) in 130 aa overlap (1-122:1-130)
10 20 30 40 50 60
pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY
:.:.::.::::::.::.:.:. ::. ::..:. :: ::: :. .:. .:..:..:::::
NP_006 MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY
10 20 30 40 50 60
70 80 90 100 110
pF1KE1 DAAKRGPGGVWAAEAISDARENIQ-----RFFGHGA---EDSLADQAADEWGRSGKDPNH
:::.:::::::::. :: .: .: .::... ::: ... :.:::::::::..
NP_006 DAAQRGPGGVWAAKLISRSRVYLQGLIDCYLFGNSSTVLEDSKSNEKAEEWGRSGKDPDR
70 80 90 100 110 120
120
pF1KE1 FRPAGLPEKY
::: :::.::
NP_006 FRPDGLPKKY
130
122 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:14:14 2016 done: Sun Nov 6 23:14:14 2016
Total Scan time: 4.630 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]