FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1532, 122 aa 1>>>pF1KE1532 122 - 122 aa - 122 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1406+/-0.000607; mu= 11.0290+/- 0.036 mean_var=55.2997+/-11.164, 0's: 0 Z-trim(110.4): 7 B-trim: 0 in 0/52 Lambda= 0.172470 statistics sampled from 11586 (11591) to 11586 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.356), width: 16 Scan time: 1.440 The best scores are: opt bits E(32554) CCDS7835.1 SAA1 gene_id:6288|Hs108|chr11 ( 122) 828 213.3 3e-56 CCDS7833.1 SAA2 gene_id:6289|Hs108|chr11 ( 122) 782 201.9 8.2e-53 CCDS76391.1 SAA4 gene_id:100528017|Hs108|chr11 ( 208) 510 134.3 3.1e-32 CCDS44548.1 SAA2 gene_id:6289|Hs108|chr11 ( 83) 505 132.9 3.3e-32 CCDS7832.1 SAA4 gene_id:6291|Hs108|chr11 ( 130) 477 126.0 6.1e-30 >>CCDS7835.1 SAA1 gene_id:6288|Hs108|chr11 (122 aa) initn: 828 init1: 828 opt: 828 Z-score: 1123.5 bits: 213.3 E(32554): 3e-56 Smith-Waterman score: 828; 96.7% identity (100.0% similar) in 122 aa overlap (1-122:1-122) 10 20 30 40 50 60 pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAADEWGRSGKDPNHFRPAGLPE :::::::::.::::.:.:::::::::::::::::::::::.::::::::::::::::::: CCDS78 DAAKRGPGGAWAAEVITDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE 70 80 90 100 110 120 pF1KE1 KY :: CCDS78 KY >>CCDS7833.1 SAA2 gene_id:6289|Hs108|chr11 (122 aa) initn: 782 init1: 782 opt: 782 Z-score: 1061.6 bits: 201.9 E(32554): 8.2e-53 Smith-Waterman score: 782; 91.8% identity (99.2% similar) in 122 aa overlap (1-122:1-122) 10 20 30 40 50 60 pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: CCDS78 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAADEWGRSGKDPNHFRPAGLPE :::::::::.::::.::.:::::::. :.:::::::::::..:::::.:::::::::::: CCDS78 DAAKRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDPNHFRPAGLPE 70 80 90 100 110 120 pF1KE1 KY :: CCDS78 KY >>CCDS76391.1 SAA4 gene_id:100528017|Hs108|chr11 (208 aa) initn: 957 init1: 510 opt: 510 Z-score: 692.1 bits: 134.3 E(32554): 3.1e-32 Smith-Waterman score: 510; 93.8% identity (97.5% similar) in 80 aa overlap (1-80:1-80) 10 20 30 40 50 60 pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: CCDS76 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAADEWGRSGKDPNHFRPAGLPE :::::::::.::::.:: : CCDS76 DAAKRGPGGAWAAEVISTMRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDI 70 80 90 100 110 120 >-- initn: 477 init1: 312 opt: 467 Z-score: 634.3 bits: 123.6 E(32554): 5.2e-29 Smith-Waterman score: 467; 55.5% identity (81.2% similar) in 128 aa overlap (3-122:81-208) 10 20 30 pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGA :.::.::::::.::.:.:. ::. ::..:. CCDS76 DKYFHARGNYDAAKRGPGGAWAAEVISTMRLFTGIVFCSLVMGVTSESWRSFFKEALQGV 60 70 80 90 100 110 40 50 60 70 80 pF1KE1 RDMWRAYSDMREANYIGSDKYFHARGNYDAAKRGPGGVWAAEAISDARENIQ-----RFF :: ::: :. .:. .:..:..::::::::.:::::::::. :: .: .: .: CCDS76 GDMGRAYWDIMISNHQNSNRYLYARGNYDAAQRGPGGVWAAKLISRSRVYLQGLIDCYLF 120 130 140 150 160 170 90 100 110 120 pF1KE1 GHGA---EDSLADQAADEWGRSGKDPNHFRPAGLPEKY :... ::: ... :.:::::::::..::: :::.:: CCDS76 GNSSTVLEDSKSNEKAEEWGRSGKDPDRFRPDGLPKKY 180 190 200 >>CCDS44548.1 SAA2 gene_id:6289|Hs108|chr11 (83 aa) initn: 505 init1: 505 opt: 505 Z-score: 691.8 bits: 132.9 E(32554): 3.3e-32 Smith-Waterman score: 505; 96.1% identity (100.0% similar) in 77 aa overlap (1-77:1-77) 10 20 30 40 50 60 pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAADEWGRSGKDPNHFRPAGLPE :::::::::.::::.:: CCDS44 DAAKRGPGGAWAAEVISLFSAEL 70 80 >>CCDS7832.1 SAA4 gene_id:6291|Hs108|chr11 (130 aa) initn: 477 init1: 312 opt: 477 Z-score: 651.0 bits: 126.0 E(32554): 6.1e-30 Smith-Waterman score: 477; 55.4% identity (81.5% similar) in 130 aa overlap (1-122:1-130) 10 20 30 40 50 60 pF1KE1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY :.:.::.::::::.::.:.:. ::. ::..:. :: ::: :. .:. .:..:..::::: CCDS78 MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DAAKRGPGGVWAAEAISDARENIQ-----RFFGHGA---EDSLADQAADEWGRSGKDPNH :::.:::::::::. :: .: .: .::... ::: ... :.:::::::::.. CCDS78 DAAQRGPGGVWAAKLISRSRVYLQGLIDCYLFGNSSTVLEDSKSNEKAEEWGRSGKDPDR 70 80 90 100 110 120 120 pF1KE1 FRPAGLPEKY ::: :::.:: CCDS78 FRPDGLPKKY 130 122 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:14:13 2016 done: Sun Nov 6 23:14:13 2016 Total Scan time: 1.440 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]