FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2386, 133 aa 1>>>pF1KE2386 133 - 133 aa - 133 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6252+/-0.000413; mu= 8.2684+/- 0.026 mean_var=54.9708+/-11.208, 0's: 0 Z-trim(109.8): 34 B-trim: 639 in 1/50 Lambda= 0.172985 statistics sampled from 17976 (18007) to 17976 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.592), E-opt: 0.2 (0.211), width: 16 Scan time: 4.160 The best scores are: opt bits E(85289) NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 848 219.9 9.7e-58 XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 739 192.7 1.4e-49 NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144) 685 179.2 1.8e-45 NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 599 157.7 4.9e-39 NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 563 148.8 2.5e-36 NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132) 559 147.8 4.9e-36 NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166) 549 145.3 3.5e-35 NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128) 482 128.5 2.9e-30 NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135) 438 117.6 6.2e-27 NP_001305970 (OMIM: 602965) fatty acid-binding pro ( 97) 378 102.6 1.5e-22 NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 335 91.9 3.5e-19 NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 335 91.9 3.5e-19 XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 335 91.9 3.5e-19 NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 330 90.6 8e-19 NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137) 325 89.4 1.9e-18 NP_443192 (OMIM: 608604) retinoid-binding protein ( 134) 319 87.9 5.4e-18 NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135) 270 75.6 2.6e-14 NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197) 272 76.2 2.7e-14 NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 269 75.4 3e-14 NP_001124465 (OMIM: 180260) retinol-binding protei ( 153) 222 63.7 1.2e-10 NP_001124464 (OMIM: 180260) retinol-binding protei ( 157) 220 63.2 1.7e-10 XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126) 209 60.4 9.3e-10 NP_001316383 (OMIM: 611866) retinol-binding protei ( 86) 155 46.9 7.3e-06 NP_001436 (OMIM: 600422) gastrotropin isoform 2 [H ( 128) 155 46.9 1.1e-05 NP_001124430 (OMIM: 600422) gastrotropin isoform 1 ( 177) 155 47.0 1.5e-05 NP_001035532 (OMIM: 600422) gastrotropin isoform 1 ( 177) 155 47.0 1.5e-05 NP_001434 (OMIM: 134650) fatty acid-binding protei ( 127) 132 41.2 0.00057 >>NP_004093 (OMIM: 134651) fatty acid-binding protein, h (133 aa) initn: 848 init1: 848 opt: 848 Z-score: 1157.6 bits: 219.9 E(85289): 9.7e-58 Smith-Waterman score: 848; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133) 10 20 30 40 50 60 pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH 70 80 90 100 110 120 130 pF1KE2 GTAVCTRTYEKEA ::::::::::::: NP_004 GTAVCTRTYEKEA 130 >>XP_011539309 (OMIM: 134651) PREDICTED: fatty acid-bind (126 aa) initn: 739 init1: 739 opt: 739 Z-score: 1011.0 bits: 192.7 E(85289): 1.4e-49 Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116) 10 20 30 40 50 60 pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILMEKL 70 80 90 100 110 120 130 pF1KE2 GTAVCTRTYEKEA XP_011 QLRNVK >>NP_001307925 (OMIM: 134651) fatty acid-binding protein (144 aa) initn: 834 init1: 685 opt: 685 Z-score: 937.2 bits: 179.2 E(85289): 1.8e-45 Smith-Waterman score: 816; 92.4% identity (92.4% similar) in 144 aa overlap (1-133:1-144) 10 20 30 40 pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSL-----------GVGFATRQVASMTKPTTIIEKNGDI :::::::::::::::::::::::: ::::::::::::::::::::::::: NP_001 MVDAFLGTWKLVDSKNFDDYMKSLAHILITFPLPSGVGFATRQVASMTKPTTIIEKNGDI 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE2 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVREL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVREL 70 80 90 100 110 120 110 120 130 pF1KE2 IDGKLILTLTHGTAVCTRTYEKEA :::::::::::::::::::::::: NP_001 IDGKLILTLTHGTAVCTRTYEKEA 130 140 >>NP_001437 (OMIM: 602965) fatty acid-binding protein, b (132 aa) initn: 599 init1: 599 opt: 599 Z-score: 821.8 bits: 157.7 E(85289): 4.9e-39 Smith-Waterman score: 599; 67.2% identity (90.8% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN ::.:: .::::..:.:::.:::.::::::::::...::::.:: ..:: ....: ::::: NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH :::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::. :::...::: NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF 70 80 90 100 110 120 130 pF1KE2 GTAVCTRTYEKEA : .: .: ::: NP_001 GDVVAVRHYEKA 130 >>NP_001433 (OMIM: 600434) fatty acid-binding protein, a (132 aa) initn: 557 init1: 557 opt: 563 Z-score: 773.3 bits: 148.8 E(85289): 2.5e-36 Smith-Waterman score: 563; 64.9% identity (84.7% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN : :::.::::::.:.::::::: .:::::::.::.:.::. :: :::..:.:..::::: NP_001 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH ::::: :: ::::.::::::::: .::::: :::.:::::. ::. :. : ::.. . NP_001 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM 70 80 90 100 110 120 130 pF1KE2 GTAVCTRTYEKEA .. ::.::. NP_001 KGVTSTRVYERA 130 >>NP_002668 (OMIM: 170715) myelin P2 protein [Homo sapie (132 aa) initn: 559 init1: 559 opt: 559 Z-score: 767.9 bits: 147.8 E(85289): 4.9e-36 Smith-Waterman score: 559; 63.4% identity (88.5% similar) in 131 aa overlap (1-131:1-131) 10 20 30 40 50 60 pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN : . ::::::::.:.:::::::.::::.:::......:::.:: :.:::.:..:.::::: NP_002 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH :::::::: ::.:::::.::.::::::. :.: ..:.:::.:::. :.:..::.. NP_002 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM 70 80 90 100 110 120 130 pF1KE2 GTAVCTRTYEKEA .:::: ::: NP_002 KGVVCTRIYEKV 130 >>NP_001305968 (OMIM: 602965) fatty acid-binding protein (166 aa) initn: 549 init1: 549 opt: 549 Z-score: 752.7 bits: 145.3 E(85289): 3.5e-35 Smith-Waterman score: 549; 68.1% identity (93.1% similar) in 116 aa overlap (1-116:1-116) 10 20 30 40 50 60 pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN ::.:: .::::..:.:::.:::.::::::::::...::::.:: ..:: ....: ::::: NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH :::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::. :::... NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVSND 70 80 90 100 110 120 130 pF1KE2 GTAVCTRTYEKEA NP_001 NSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM 130 140 150 160 >>NP_001305971 (OMIM: 602965) fatty acid-binding protein (128 aa) initn: 482 init1: 482 opt: 482 Z-score: 664.3 bits: 128.5 E(85289): 2.9e-30 Smith-Waterman score: 482; 67.3% identity (89.7% similar) in 107 aa overlap (25-131:21-127) 10 20 30 40 50 60 pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN :::::::::...::::.:: ..:: ....: ::::: NP_001 MQLKEKDWRSALIKTANQQKGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH :::::.:: ::::::::::. ::.:.::: ::::.:::::.::..:::. :::...::: NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF 60 70 80 90 100 110 130 pF1KE2 GTAVCTRTYEKEA : .: .: ::: NP_001 GDVVAVRHYEKA 120 >>NP_001435 (OMIM: 605168) fatty acid-binding protein, e (135 aa) initn: 438 init1: 438 opt: 438 Z-score: 604.5 bits: 117.6 E(85289): 6.2e-27 Smith-Waterman score: 438; 50.0% identity (80.8% similar) in 130 aa overlap (2-131:4-133) 10 20 30 40 50 pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTF :. . : :.:::::.::.::: ::::.: :....:.:: :: .: ::.::.::. NP_001 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 KNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTL :.:..: :: .:.::::: ::.... .. : ::. :.:::.:.:..:.: ::::.. NP_001 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC 70 80 90 100 110 120 120 130 pF1KE2 THGTAVCTRTYEKEA . ....::: ::: NP_001 VMNNVTCTRIYEKVE 130 >>NP_001305970 (OMIM: 602965) fatty acid-binding protein (97 aa) initn: 387 init1: 378 opt: 378 Z-score: 526.1 bits: 102.6 E(85289): 1.5e-22 Smith-Waterman score: 378; 69.5% identity (92.7% similar) in 82 aa overlap (1-82:1-82) 10 20 30 40 50 60 pF1KE2 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN ::.:: .::::..:.:::.:::.::::::::::...::::.:: ..:: ....: ::::: NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH :::::.:: ::::::::::. : NP_001 TEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE 70 80 90 133 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:14:42 2016 done: Sun Nov 6 23:14:43 2016 Total Scan time: 4.160 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]