FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3652, 366 aa
  1>>>pF1KE3652 366 - 366 aa - 366 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4564+/-0.000663; mu= 13.4558+/- 0.040
 mean_var=123.8112+/-24.586, 0's: 0 Z-trim(115.3): 28  B-trim: 0 in 0/51
 Lambda= 0.115264
 statistics sampled from 15835 (15863) to 15835 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.487), width:  16
 Scan time:  3.310

The best scores are:                                      opt bits E(32554)
CCDS2444.1 INHA gene_id:3623|Hs108|chr2            ( 366) 2566 437.0 1.2e-122


>>CCDS2444.1 INHA gene_id:3623|Hs108|chr2                 (366 aa)
 initn: 2566 init1: 2566 opt: 2566  Z-score: 2315.4  bits: 437.0 E(32554): 1.2e-122
Smith-Waterman score: 2566; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)

               10        20        30        40        50        60
pF1KE3 MVLHLLLFLLLTPQGGHSCQGLELARELVLAKVRALFLDALGPPAVTREGGDPGVRRLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MVLHLLLFLLLTPQGGHSCQGLELARELVLAKVRALFLDALGPPAVTREGGDPGVRRLPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RHALGGFTHRGSEPEEEEDVSQAILFPATDASCEDKSAARGLAQEAEEGLFRYMFRPSQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 RHALGGFTHRGSEPEEEEDVSQAILFPATDASCEDKSAARGLAQEAEEGLFRYMFRPSQH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 TRSRQVTSAQLWFHTGLDRQGTAASNSSEPLLGLLALSPGGPVAVPMSLGHAPPHWAVLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 TRSRQVTSAQLWFHTGLDRQGTAASNSSEPLLGLLALSPGGPVAVPMSLGHAPPHWAVLH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LATSALSLLTHPVLVLLLRCPLCTCSARPEATPFLVAHTRTRPPSGGERARRSTPLMSWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LATSALSLLTHPVLVLLLRCPLCTCSARPEATPFLVAHTRTRPPSGGERARRSTPLMSWP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 WSPSALRLLQRPPEEPAAHANCHRVALNISFQELGWERWIVYPPSFIFHYCHGGCGLHIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 WSPSALRLLQRPPEEPAAHANCHRVALNISFQELGWERWIVYPPSFIFHYCHGGCGLHIP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 PNLSLPVPGAPPTPAQPYSLLPGAQPCCAALPGTMRPLHVRTTSDGGYSFKYETVPNLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 PNLSLPVPGAPPTPAQPYSLLPGAQPCCAALPGTMRPLHVRTTSDGGYSFKYETVPNLLT
              310       320       330       340       350       360

             
pF1KE3 QHCACI
       ::::::
CCDS24 QHCACI
             




366 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:15:51 2016 done: Sun Nov  6 23:15:52 2016
 Total Scan time:  3.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]