FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5208, 244 aa 1>>>pF1KE5208 244 - 244 aa - 244 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1015+/-0.000855; mu= 10.5493+/- 0.051 mean_var=77.1203+/-15.254, 0's: 0 Z-trim(107.4): 25 B-trim: 0 in 0/49 Lambda= 0.146046 statistics sampled from 9541 (9564) to 9541 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.294), width: 16 Scan time: 1.760 The best scores are: opt bits E(32554) CCDS12488.1 TBCB gene_id:1155|Hs108|chr19 ( 244) 1610 348.4 2.6e-96 CCDS74344.1 TBCB gene_id:1155|Hs108|chr19 ( 193) 1294 281.8 2.3e-76 >>CCDS12488.1 TBCB gene_id:1155|Hs108|chr19 (244 aa) initn: 1610 init1: 1610 opt: 1610 Z-score: 1842.7 bits: 348.4 E(32554): 2.6e-96 Smith-Waterman score: 1610; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244) 10 20 30 40 50 60 pF1KE5 MEVTGVSAPTVTVFISSSLNTFRSEKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MEVTGVSAPTVTVFISSSLNTFRSEKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 DKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 DKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQDT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 VRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 YVGLTDFKPGYWIGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPAVVTVGDFPEEDYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 YVGLTDFKPGYWIGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPAVVTVGDFPEEDYG 190 200 210 220 230 240 pF1KE5 LDEI :::: CCDS12 LDEI >>CCDS74344.1 TBCB gene_id:1155|Hs108|chr19 (193 aa) initn: 1294 init1: 1294 opt: 1294 Z-score: 1484.5 bits: 281.8 E(32554): 2.3e-76 Smith-Waterman score: 1294; 100.0% identity (100.0% similar) in 193 aa overlap (52-244:1-193) 30 40 50 60 70 80 pF1KE5 FRSEKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVDDKFYSKLDQEDALLGSYPVDD :::::::::::::::::::::::::::::: CCDS74 MELELYGVDDKFYSKLDQEDALLGSYPVDD 10 20 30 90 100 110 120 130 140 pF1KE5 GCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQDTVRSFLKRSKLGRYNEEERAQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 GCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQDTVRSFLKRSKLGRYNEEERAQQ 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE5 EAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYVGLTDFKPGYWIGVRYDEPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 EAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYVGLTDFKPGYWIGVRYDEPL 100 110 120 130 140 150 210 220 230 240 pF1KE5 GKNDGSVNGKRYFECQAKYGAFVKPAVVTVGDFPEEDYGLDEI ::::::::::::::::::::::::::::::::::::::::::: CCDS74 GKNDGSVNGKRYFECQAKYGAFVKPAVVTVGDFPEEDYGLDEI 160 170 180 190 244 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:31:15 2016 done: Mon Nov 7 22:31:15 2016 Total Scan time: 1.760 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]