FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5115, 106 aa 1>>>pF1KE5115 106 - 106 aa - 106 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7848+/-0.000284; mu= 12.6301+/- 0.018 mean_var=57.3758+/-11.516, 0's: 0 Z-trim(117.8): 21 B-trim: 124 in 1/53 Lambda= 0.169321 statistics sampled from 30072 (30093) to 30072 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.353), width: 16 Scan time: 4.510 The best scores are: opt bits E(85289) NP_001230587 (OMIM: 600443) glutaredoxin-1 [Homo s ( 106) 707 180.0 6.4e-46 NP_001112362 (OMIM: 600443) glutaredoxin-1 [Homo s ( 106) 707 180.0 6.4e-46 NP_002055 (OMIM: 600443) glutaredoxin-1 [Homo sapi ( 106) 707 180.0 6.4e-46 NP_001230588 (OMIM: 600443) glutaredoxin-1 [Homo s ( 106) 707 180.0 6.4e-46 NP_001306220 (OMIM: 606820) glutaredoxin 2 isoform ( 124) 203 56.9 8.4e-09 XP_016856886 (OMIM: 606820) PREDICTED: glutaredoxi ( 124) 203 56.9 8.4e-09 NP_001230328 (OMIM: 606820) glutaredoxin 2 isoform ( 124) 203 56.9 8.4e-09 NP_932066 (OMIM: 606820) glutaredoxin 2 isoform 2 ( 164) 203 57.0 1.1e-08 NP_057150 (OMIM: 606820) glutaredoxin 2 isoform 1 ( 165) 203 57.0 1.1e-08 NP_001166984 (OMIM: 606235) thioredoxin reductase ( 607) 194 55.1 1.4e-07 NP_443115 (OMIM: 606235) thioredoxin reductase 3 i ( 643) 194 55.1 1.5e-07 NP_057501 (OMIM: 205950,609588,616859,616860) glut ( 157) 160 46.4 1.5e-05 >>NP_001230587 (OMIM: 600443) glutaredoxin-1 [Homo sapie (106 aa) initn: 707 init1: 707 opt: 707 Z-score: 945.4 bits: 180.0 E(85289): 6.4e-46 Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106) 10 20 30 40 50 60 pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY 10 20 30 40 50 60 70 80 90 100 pF1KE5 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ :::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ 70 80 90 100 >>NP_001112362 (OMIM: 600443) glutaredoxin-1 [Homo sapie (106 aa) initn: 707 init1: 707 opt: 707 Z-score: 945.4 bits: 180.0 E(85289): 6.4e-46 Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106) 10 20 30 40 50 60 pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY 10 20 30 40 50 60 70 80 90 100 pF1KE5 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ :::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ 70 80 90 100 >>NP_002055 (OMIM: 600443) glutaredoxin-1 [Homo sapiens] (106 aa) initn: 707 init1: 707 opt: 707 Z-score: 945.4 bits: 180.0 E(85289): 6.4e-46 Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106) 10 20 30 40 50 60 pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY 10 20 30 40 50 60 70 80 90 100 pF1KE5 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ :::::::::::::::::::::::::::::::::::::::::::::: NP_002 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ 70 80 90 100 >>NP_001230588 (OMIM: 600443) glutaredoxin-1 [Homo sapie (106 aa) initn: 707 init1: 707 opt: 707 Z-score: 945.4 bits: 180.0 E(85289): 6.4e-46 Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106) 10 20 30 40 50 60 pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY 10 20 30 40 50 60 70 80 90 100 pF1KE5 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ :::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ 70 80 90 100 >>NP_001306220 (OMIM: 606820) glutaredoxin 2 isoform 3 [ (124 aa) initn: 196 init1: 133 opt: 203 Z-score: 279.0 bits: 56.9 E(85289): 8.4e-09 Smith-Waterman score: 203; 34.8% identity (68.5% similar) in 92 aa overlap (10-101:24-112) 10 20 30 40 pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFV :. . ::.: : .: :: :.... .. .. ..:. NP_001 MESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVEL- 10 20 30 40 50 50 60 70 80 90 100 pF1KE5 DITATNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ :. .. :..:: : ..:: :::::.:.. ::: .: :.. :.:: ..: NP_001 DLL--EYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKK 60 70 80 90 100 110 NP_001 SKRKEFQ 120 >>XP_016856886 (OMIM: 606820) PREDICTED: glutaredoxin 2 (124 aa) initn: 196 init1: 133 opt: 203 Z-score: 279.0 bits: 56.9 E(85289): 8.4e-09 Smith-Waterman score: 203; 34.8% identity (68.5% similar) in 92 aa overlap (10-101:24-112) 10 20 30 40 pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFV :. . ::.: : .: :: :.... .. .. ..:. XP_016 MESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVEL- 10 20 30 40 50 50 60 70 80 90 100 pF1KE5 DITATNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ :. .. :..:: : ..:: :::::.:.. ::: .: :.. :.:: ..: XP_016 DLL--EYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKK 60 70 80 90 100 110 XP_016 SKRKEFQ 120 >>NP_001230328 (OMIM: 606820) glutaredoxin 2 isoform 3 [ (124 aa) initn: 196 init1: 133 opt: 203 Z-score: 279.0 bits: 56.9 E(85289): 8.4e-09 Smith-Waterman score: 203; 34.8% identity (68.5% similar) in 92 aa overlap (10-101:24-112) 10 20 30 40 pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFV :. . ::.: : .: :: :.... .. .. ..:. NP_001 MESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVEL- 10 20 30 40 50 50 60 70 80 90 100 pF1KE5 DITATNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ :. .. :..:: : ..:: :::::.:.. ::: .: :.. :.:: ..: NP_001 DLL--EYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKK 60 70 80 90 100 110 NP_001 SKRKEFQ 120 >>NP_932066 (OMIM: 606820) glutaredoxin 2 isoform 2 prec (164 aa) initn: 196 init1: 133 opt: 203 Z-score: 277.2 bits: 57.0 E(85289): 1.1e-08 Smith-Waterman score: 203; 34.8% identity (68.5% similar) in 92 aa overlap (10-101:64-152) 10 20 30 pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIK :. . ::.: : .: :: :.... .. .. NP_932 AAAAASGMESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVN 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE5 QGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRL ..:. :. .. :..:: : ..:: :::::.:.. ::: .: :.. :.:: . NP_932 YKVVEL-DLL--EYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 100 110 120 130 140 150 100 pF1KE5 KQIGALQ .: NP_932 HQCYLKKSKRKEFQ 160 >>NP_057150 (OMIM: 606820) glutaredoxin 2 isoform 1 [Hom (165 aa) initn: 196 init1: 133 opt: 203 Z-score: 277.2 bits: 57.0 E(85289): 1.1e-08 Smith-Waterman score: 203; 34.8% identity (68.5% similar) in 92 aa overlap (10-101:65-153) 10 20 30 pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIK :. . ::.: : .: :: :.... .. .. NP_057 TRSAARRMESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVN 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE5 QGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRL ..:. :. .. :..:: : ..:: :::::.:.. ::: .: :.. :.:: . NP_057 YKVVEL-DLL--EYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 100 110 120 130 140 150 100 pF1KE5 KQIGALQ .: NP_057 HQCYLKKSKRKEFQ 160 >>NP_001166984 (OMIM: 606235) thioredoxin reductase 3 is (607 aa) initn: 203 init1: 113 opt: 194 Z-score: 257.1 bits: 55.1 E(85289): 1.4e-07 Smith-Waterman score: 194; 33.7% identity (70.7% similar) in 92 aa overlap (10-101:63-150) 10 20 30 pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIK :. ..::.: : ::. :..:..:.: .. NP_001 PPGRRARLSSPGPSRSSEAREELRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVE 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE5 QGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRL ..::. .. . ..:. :...:. .::: .:..: .:::.. . ::: :: .: NP_001 CNVLELDQV---DDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSG-LLQKL 100 110 120 130 140 100 pF1KE5 KQIGALQ : NP_001 LQEDLAYDYDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGC 150 160 170 180 190 200 106 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:29:09 2016 done: Mon Nov 7 21:29:09 2016 Total Scan time: 4.510 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]