FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6120, 114 aa
  1>>>pF1KE6120 114 - 114 aa - 114 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1592+/-0.000626; mu= 11.2003+/- 0.038
 mean_var=56.9951+/-11.379, 0's: 0 Z-trim(110.1): 15  B-trim: 0 in 0/50
 Lambda= 0.169885
 statistics sampled from 11337 (11342) to 11337 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.348), width:  16
 Scan time:  1.340

The best scores are:                                      opt bits E(32554)
CCDS1808.1 COX7A2L gene_id:9167|Hs108|chr2         ( 114)  753 191.8 7.5e-50


>>CCDS1808.1 COX7A2L gene_id:9167|Hs108|chr2              (114 aa)
 initn: 753 init1: 753 opt: 753  Z-score: 1008.4  bits: 191.8 E(32554): 7.5e-50
Smith-Waterman score: 753; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE6 MYYKFSGFTQKLAGAWASEAYSPQGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MYYKFSGFTQKLAGAWASEAYSPQGLKPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKV
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE6 PELQKFFQKADGVPVYLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPKNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 PELQKFFQKADGVPVYLKRGLPDQMLYRTTMALTVGGTIYCLIALYMASQPKNK
               70        80        90       100       110    




114 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:37:37 2016 done: Tue Nov  8 09:37:37 2016
 Total Scan time:  1.340 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]