FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6226, 211 aa 1>>>pF1KE6226 211 - 211 aa - 211 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2613+/-0.000344; mu= 14.1002+/- 0.022 mean_var=74.7072+/-14.965, 0's: 0 Z-trim(116.2): 79 B-trim: 737 in 1/55 Lambda= 0.148386 statistics sampled from 27105 (27193) to 27105 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.319), width: 16 Scan time: 5.150 The best scores are: opt bits E(85289) NP_060416 (OMIM: 614505,614557) peptidyl-prolyl ci ( 211) 1438 316.7 1.7e-86 NP_001128684 (OMIM: 607062) peptidyl-prolyl cis-tr ( 221) 698 158.3 8.7e-39 NP_851939 (OMIM: 607062) peptidyl-prolyl cis-trans ( 222) 696 157.9 1.2e-38 XP_005246695 (OMIM: 607062) PREDICTED: peptidyl-pr ( 181) 364 86.8 2.5e-17 XP_011509651 (OMIM: 607062) PREDICTED: peptidyl-pr ( 114) 349 83.4 1.6e-16 XP_011509650 (OMIM: 607062) PREDICTED: peptidyl-pr ( 115) 349 83.4 1.6e-16 NP_476433 (OMIM: 186946) peptidyl-prolyl cis-trans ( 142) 346 82.8 3e-16 NP_004461 (OMIM: 186946) peptidyl-prolyl cis-trans ( 142) 346 82.8 3e-16 XP_005273905 (OMIM: 186946) PREDICTED: peptidyl-pr ( 142) 346 82.8 3e-16 NP_001128680 (OMIM: 186946) peptidyl-prolyl cis-tr ( 142) 346 82.8 3e-16 NP_001271272 (OMIM: 616257) peptidyl-prolyl cis-tr ( 338) 315 76.5 5.9e-14 NP_009201 (OMIM: 616257) peptidyl-prolyl cis-trans ( 570) 315 76.6 8.8e-14 NP_001271270 (OMIM: 616257) peptidyl-prolyl cis-tr ( 623) 315 76.7 9.4e-14 XP_011523402 (OMIM: 259450,607063,610968) PREDICTE ( 510) 308 75.1 2.3e-13 NP_068758 (OMIM: 259450,607063,610968) peptidyl-pr ( 582) 308 75.1 2.5e-13 XP_011523401 (OMIM: 259450,607063,610968) PREDICTE ( 601) 308 75.1 2.6e-13 XP_011513417 (OMIM: 616257) PREDICTED: peptidyl-pr ( 359) 298 72.8 7.6e-13 NP_463460 (OMIM: 186945) peptidyl-prolyl cis-trans ( 108) 252 62.6 2.8e-10 NP_000792 (OMIM: 186945) peptidyl-prolyl cis-trans ( 108) 252 62.6 2.8e-10 XP_011534867 (OMIM: 186947) PREDICTED: peptidyl-pr ( 191) 229 57.9 1.3e-08 NP_002004 (OMIM: 186947) peptidyl-prolyl cis-trans ( 224) 229 57.9 1.5e-08 NP_004107 (OMIM: 600620) peptidyl-prolyl cis-trans ( 108) 217 55.1 5e-08 NP_057678 (OMIM: 610571) peptidyl-prolyl cis-trans ( 201) 211 54.0 2e-07 NP_001139249 (OMIM: 602623,608516) peptidyl-prolyl ( 268) 210 53.9 2.9e-07 NP_004108 (OMIM: 602623,608516) peptidyl-prolyl ci ( 457) 210 54.1 4.3e-07 NP_001139248 (OMIM: 602623,608516) peptidyl-prolyl ( 457) 210 54.1 4.3e-07 NP_001139247 (OMIM: 602623,608516) peptidyl-prolyl ( 457) 210 54.1 4.3e-07 NP_001137254 (OMIM: 610571) peptidyl-prolyl cis-tr ( 146) 196 50.7 1.4e-06 XP_011519231 (OMIM: 600611) PREDICTED: peptidyl-pr ( 414) 200 51.9 1.8e-06 NP_002005 (OMIM: 600611) peptidyl-prolyl cis-trans ( 459) 200 51.9 1.9e-06 XP_016859085 (OMIM: 600620) PREDICTED: peptidyl-pr ( 79) 184 48.0 5.2e-06 XP_016859082 (OMIM: 600620) PREDICTED: peptidyl-pr ( 79) 184 48.0 5.2e-06 XP_016859084 (OMIM: 600620) PREDICTED: peptidyl-pr ( 79) 184 48.0 5.2e-06 NP_001309893 (OMIM: 600620) peptidyl-prolyl cis-tr ( 79) 184 48.0 5.2e-06 NP_001309892 (OMIM: 600620) peptidyl-prolyl cis-tr ( 79) 184 48.0 5.2e-06 XP_016859083 (OMIM: 600620) PREDICTED: peptidyl-pr ( 79) 184 48.0 5.2e-06 XP_016876582 (OMIM: 186947) PREDICTED: peptidyl-pr ( 196) 182 47.8 1.4e-05 XP_016876581 (OMIM: 186947) PREDICTED: peptidyl-pr ( 229) 182 47.9 1.6e-05 XP_016868231 (OMIM: 604839) PREDICTED: inactive pe ( 266) 149 40.8 0.0024 XP_016868230 (OMIM: 604839) PREDICTED: inactive pe ( 317) 149 40.9 0.0028 NP_001128683 (OMIM: 604839) inactive peptidyl-prol ( 322) 149 40.9 0.0028 NP_003593 (OMIM: 604839) inactive peptidyl-prolyl ( 327) 149 40.9 0.0028 XP_006716216 (OMIM: 604839) PREDICTED: inactive pe ( 282) 140 38.9 0.0096 >>NP_060416 (OMIM: 614505,614557) peptidyl-prolyl cis-tr (211 aa) initn: 1438 init1: 1438 opt: 1438 Z-score: 1673.7 bits: 316.7 E(85289): 1.7e-86 Smith-Waterman score: 1438; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211) 10 20 30 40 50 60 pF1KE6 MRLFLWNAVLTLFVTSLIGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MRLFLWNAVLTLFVTSLIGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGKIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 SLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGKIP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PESTLIFNIDLLEIRNGPRSHESFQEMDLNDDWKLSKDEVKAYLKKEFEKHGAVVNESHH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 PESTLIFNIDLLEIRNGPRSHESFQEMDLNDDWKLSKDEVKAYLKKEFEKHGAVVNESHH 130 140 150 160 170 180 190 200 210 pF1KE6 DALVEDIFDKEDEDKDGFISAREFTYKHDEL ::::::::::::::::::::::::::::::: NP_060 DALVEDIFDKEDEDKDGFISAREFTYKHDEL 190 200 210 >>NP_001128684 (OMIM: 607062) peptidyl-prolyl cis-trans (221 aa) initn: 692 init1: 360 opt: 698 Z-score: 817.3 bits: 158.3 E(85289): 8.7e-39 Smith-Waterman score: 698; 48.3% identity (77.7% similar) in 211 aa overlap (3-211:15-221) 10 20 30 40 pF1KE6 MRLFLWNAVLTLFVTSLIGALIPEPEVKIEVLQKPFICHRKTKGGDLM ..::. ::... :::::::..: : . .: :::. NP_001 MPKTMHFLFRFIVFFYLWG----LFTAQRQKKEESTEEVKIEVLHRPENCSKTSKKGDLL 10 20 30 40 50 50 60 70 80 90 100 pF1KE6 LVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPA .::.::: :::: :. .. .:.:.: ::.::. ...:: : .. :: :::::..:::. NP_001 NAHYDGYLAKDGSKFYCSRTQNEGHPKWFVLGVGQVIKGLDIAMTDMCPGEKRKVVIPPS 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 LGYGKEG-KGKIPPESTLIFNIDLLEIRNGPRSHESFQEMDLNDDWKLSKDEVKAYLKKE ..::::: .:::::..::::.:.: . .:::: :.:...:...: .::: :.. ::..: NP_001 FAYGKEGYEGKIPPDATLIFEIELYAVTKGPRSIETFKQIDMDNDRQLSKAEINLYLQRE 120 130 140 150 160 170 170 180 190 200 210 pF1KE6 FEKHGAVVNESHHDALVEDIFDKEDEDKDGFISAREFT-YKHDEL ::: ..:..::..:::: :.:.: ::::: .:.. :.:::: NP_001 FEKDEKPRDKSYQDAVLEDIFKKNDHDGDGFISPKEYNVYQHDEL 180 190 200 210 220 >>NP_851939 (OMIM: 607062) peptidyl-prolyl cis-trans iso (222 aa) initn: 692 init1: 360 opt: 696 Z-score: 815.0 bits: 157.9 E(85289): 1.2e-38 Smith-Waterman score: 696; 48.1% identity (77.4% similar) in 212 aa overlap (3-211:15-222) 10 20 30 40 pF1KE6 MRLFLWNAVLTLFVTSLIGALIPEPEVKIEVLQKPFICHRKTKGGDLM ..::. ::... :::::::..: : . .: :::. NP_851 MPKTMHFLFRFIVFFYLWG----LFTAQRQKKEESTEEVKIEVLHRPENCSKTSKKGDLL 10 20 30 40 50 50 60 70 80 90 100 pF1KE6 LVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPA .::.::: :::: :. .. .:.:.: ::.::. ...:: : .. :: :::::..:::. NP_851 NAHYDGYLAKDGSKFYCSRTQNEGHPKWFVLGVGQVIKGLDIAMTDMCPGEKRKVVIPPS 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 LGYGKEG--KGKIPPESTLIFNIDLLEIRNGPRSHESFQEMDLNDDWKLSKDEVKAYLKK ..::::: .:::::..::::.:.: . .:::: :.:...:...: .::: :.. ::.. NP_851 FAYGKEGYAEGKIPPDATLIFEIELYAVTKGPRSIETFKQIDMDNDRQLSKAEINLYLQR 120 130 140 150 160 170 170 180 190 200 210 pF1KE6 EFEKHGAVVNESHHDALVEDIFDKEDEDKDGFISAREFT-YKHDEL :::: ..:..::..:::: :.:.: ::::: .:.. :.:::: NP_851 EFEKDEKPRDKSYQDAVLEDIFKKNDHDGDGFISPKEYNVYQHDEL 180 190 200 210 220 >>XP_005246695 (OMIM: 607062) PREDICTED: peptidyl-prolyl (181 aa) initn: 363 init1: 363 opt: 364 Z-score: 432.1 bits: 86.8 E(85289): 2.5e-17 Smith-Waterman score: 364; 45.7% identity (72.4% similar) in 116 aa overlap (3-118:63-174) 10 20 30 pF1KE6 MRLFLWNAVLTLFVTSLIGALIPEPEVKIEVL ..::. ::... ::::::: XP_005 GARVTRGRESSVLLEPMPKTMHFLFRFIVFFYLWG----LFTAQRQKKEESTEEVKIEVL 40 50 60 70 80 40 50 60 70 80 90 pF1KE6 QKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGL ..: : . .: :::. .::.::: :::: :. .. .:.:.: ::.::. ...:: : .. XP_005 HRPENCSKTSKKGDLLNAHYDGYLAKDGSKFYCSRTQNEGHPKWFVLGVGQVIKGLDIAM 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE6 KGMCVGEKRKLIIPPALGYGKEGKGKIPPESTLIFNIDLLEIRNGPRSHESFQEMDLNDD :: :::::..:::...::::: : XP_005 TDMCPGEKRKVVIPPSFAYGKEGYDKPLLAKGI 150 160 170 180 >>XP_011509651 (OMIM: 607062) PREDICTED: peptidyl-prolyl (114 aa) initn: 346 init1: 321 opt: 349 Z-score: 417.5 bits: 83.4 E(85289): 1.6e-16 Smith-Waterman score: 349; 51.5% identity (83.5% similar) in 97 aa overlap (116-211:18-114) 90 100 110 120 130 140 pF1KE6 KGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGKIPPESTLIFNIDLLEIRNGPRSHESFQ .:::::..::::.:.: . .:::: :.:. XP_011 MPIMTATWLKTARNSTAEGKIPPDATLIFEIELYAVTKGPRSIETFK 10 20 30 40 150 160 170 180 190 200 pF1KE6 EMDLNDDWKLSKDEVKAYLKKEFEKHGAVVNESHHDALVEDIFDKEDEDKDGFISAREFT ..:...: .::: :.. ::..:::: ..:..::..:::: :.:.: ::::: .:.. XP_011 QIDMDNDRQLSKAEINLYLQREFEKDEKPRDKSYQDAVLEDIFKKNDHDGDGFISPKEYN 50 60 70 80 90 100 210 pF1KE6 -YKHDEL :.:::: XP_011 VYQHDEL 110 >>XP_011509650 (OMIM: 607062) PREDICTED: peptidyl-prolyl (115 aa) initn: 346 init1: 321 opt: 349 Z-score: 417.5 bits: 83.4 E(85289): 1.6e-16 Smith-Waterman score: 349; 51.5% identity (83.5% similar) in 97 aa overlap (116-211:19-115) 90 100 110 120 130 140 pF1KE6 KGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGKIPPESTLIFNIDLLEIRNGPRSHESFQ .:::::..::::.:.: . .:::: :.:. XP_011 MPIMTATWLKTARNSTAAEGKIPPDATLIFEIELYAVTKGPRSIETFK 10 20 30 40 150 160 170 180 190 200 pF1KE6 EMDLNDDWKLSKDEVKAYLKKEFEKHGAVVNESHHDALVEDIFDKEDEDKDGFISAREFT ..:...: .::: :.. ::..:::: ..:..::..:::: :.:.: ::::: .:.. XP_011 QIDMDNDRQLSKAEINLYLQREFEKDEKPRDKSYQDAVLEDIFKKNDHDGDGFISPKEYN 50 60 70 80 90 100 210 pF1KE6 -YKHDEL :.:::: XP_011 VYQHDEL 110 >>NP_476433 (OMIM: 186946) peptidyl-prolyl cis-trans iso (142 aa) initn: 302 init1: 208 opt: 346 Z-score: 412.7 bits: 82.8 E(85289): 3e-16 Smith-Waterman score: 346; 43.9% identity (68.3% similar) in 139 aa overlap (1-134:1-136) 10 20 30 40 50 pF1KE6 MRL--FLWNAVLTLFVTSLIGALIPEPEVKIEVLQKPFI--CHRKTKGGDLMLVHYEGYL ::: : .::.. .... : : . :... : . : :.. ::.. .:: : : NP_476 MRLSWFRVLTVLSICLSAVATATGAEGKRKLQIGVKKRVDHCPIKSRKGDVLHMHYTGKL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 EKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK : ::. : :. .: ::. :.:: ...::::::: ::: ::::::.:: ::::..: NP_476 E-DGTEFDSSLPQN--QPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGA 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 G-KIPPESTLIFNIDLLEIRNGPRSHESFQEMDLNDDWKLSKDEVKAYLKKEFEKHGAVV ::: .::.:...::.: NP_476 PPKIPGGATLVFEVELLKIERRTEL 120 130 140 >>NP_004461 (OMIM: 186946) peptidyl-prolyl cis-trans iso (142 aa) initn: 302 init1: 208 opt: 346 Z-score: 412.7 bits: 82.8 E(85289): 3e-16 Smith-Waterman score: 346; 43.9% identity (68.3% similar) in 139 aa overlap (1-134:1-136) 10 20 30 40 50 pF1KE6 MRL--FLWNAVLTLFVTSLIGALIPEPEVKIEVLQKPFI--CHRKTKGGDLMLVHYEGYL ::: : .::.. .... : : . :... : . : :.. ::.. .:: : : NP_004 MRLSWFRVLTVLSICLSAVATATGAEGKRKLQIGVKKRVDHCPIKSRKGDVLHMHYTGKL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 EKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK : ::. : :. .: ::. :.:: ...::::::: ::: ::::::.:: ::::..: NP_004 E-DGTEFDSSLPQN--QPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGA 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 G-KIPPESTLIFNIDLLEIRNGPRSHESFQEMDLNDDWKLSKDEVKAYLKKEFEKHGAVV ::: .::.:...::.: NP_004 PPKIPGGATLVFEVELLKIERRTEL 120 130 140 >>XP_005273905 (OMIM: 186946) PREDICTED: peptidyl-prolyl (142 aa) initn: 302 init1: 208 opt: 346 Z-score: 412.7 bits: 82.8 E(85289): 3e-16 Smith-Waterman score: 346; 43.9% identity (68.3% similar) in 139 aa overlap (1-134:1-136) 10 20 30 40 50 pF1KE6 MRL--FLWNAVLTLFVTSLIGALIPEPEVKIEVLQKPFI--CHRKTKGGDLMLVHYEGYL ::: : .::.. .... : : . :... : . : :.. ::.. .:: : : XP_005 MRLSWFRVLTVLSICLSAVATATGAEGKRKLQIGVKKRVDHCPIKSRKGDVLHMHYTGKL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 EKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK : ::. : :. .: ::. :.:: ...::::::: ::: ::::::.:: ::::..: XP_005 E-DGTEFDSSLPQN--QPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGA 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 G-KIPPESTLIFNIDLLEIRNGPRSHESFQEMDLNDDWKLSKDEVKAYLKKEFEKHGAVV ::: .::.:...::.: XP_005 PPKIPGGATLVFEVELLKIERRTEL 120 130 140 >>NP_001128680 (OMIM: 186946) peptidyl-prolyl cis-trans (142 aa) initn: 302 init1: 208 opt: 346 Z-score: 412.7 bits: 82.8 E(85289): 3e-16 Smith-Waterman score: 346; 43.9% identity (68.3% similar) in 139 aa overlap (1-134:1-136) 10 20 30 40 50 pF1KE6 MRL--FLWNAVLTLFVTSLIGALIPEPEVKIEVLQKPFI--CHRKTKGGDLMLVHYEGYL ::: : .::.. .... : : . :... : . : :.. ::.. .:: : : NP_001 MRLSWFRVLTVLSICLSAVATATGAEGKRKLQIGVKKRVDHCPIKSRKGDVLHMHYTGKL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 EKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK : ::. : :. .: ::. :.:: ...::::::: ::: ::::::.:: ::::..: NP_001 E-DGTEFDSSLPQN--QPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGA 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 G-KIPPESTLIFNIDLLEIRNGPRSHESFQEMDLNDDWKLSKDEVKAYLKKEFEKHGAVV ::: .::.:...::.: NP_001 PPKIPGGATLVFEVELLKIERRTEL 120 130 140 211 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:15:23 2016 done: Tue Nov 8 11:15:24 2016 Total Scan time: 5.150 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]