FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5619, 481 aa 1>>>pF1KE5619 481 - 481 aa - 481 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8137+/-0.000946; mu= 15.6231+/- 0.057 mean_var=73.5193+/-14.534, 0's: 0 Z-trim(105.6): 21 B-trim: 0 in 0/49 Lambda= 0.149580 statistics sampled from 8509 (8517) to 8509 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.262), width: 16 Scan time: 2.940 The best scores are: opt bits E(32554) CCDS8466.1 PUS3 gene_id:83480|Hs108|chr11 ( 481) 3230 706.5 1.6e-203 CCDS73411.1 PUS3 gene_id:83480|Hs108|chr11 ( 273) 1879 414.8 5.6e-116 >>CCDS8466.1 PUS3 gene_id:83480|Hs108|chr11 (481 aa) initn: 3230 init1: 3230 opt: 3230 Z-score: 3767.4 bits: 706.5 E(32554): 1.6e-203 Smith-Waterman score: 3230; 99.4% identity (99.8% similar) in 481 aa overlap (1-481:1-481) 10 20 30 40 50 60 pF1KE5 MADNDTDRNQTEKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSSGAGKTKRAFDFSAH :: ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: CCDS84 MAYNDTDRNQTEKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSAH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 GRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS84 GRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS84 VSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 EPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS84 EPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 ILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS84 ILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIID 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS84 ELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 MLYSMLQGLDTVPVPCGIGPKMDGMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRPKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS84 MLYSMLQGLDTVPVPCGIGPKMDGMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRPKC 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 QGLESRIQHFVRRGRIEHPHLFHEEETKAKRDCNDTLEEDNTNLETPTKRVCVDTEIKSI :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: CCDS84 QGLESRIQHFVRRGRIEHPHLFHEEETKAKRDCNDTLEEENTNLETPTKRVCVDTEIKSI 430 440 450 460 470 480 pF1KE5 I : CCDS84 I >>CCDS73411.1 PUS3 gene_id:83480|Hs108|chr11 (273 aa) initn: 1879 init1: 1879 opt: 1879 Z-score: 2195.6 bits: 414.8 E(32554): 5.6e-116 Smith-Waterman score: 1879; 99.6% identity (100.0% similar) in 273 aa overlap (209-481:1-273) 180 190 200 210 220 230 pF1KE5 PVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQ :::::::::::::::::::::::::::::: CCDS73 MDYAAQKYVGTHDFRNLCKMDVANGVINFQ 10 20 30 240 250 260 270 280 290 pF1KE5 RTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 RTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEI 40 50 60 70 80 90 300 310 320 330 340 350 pF1KE5 IDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 IDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVK 100 110 120 130 140 150 360 370 380 390 400 410 pF1KE5 THMLYSMLQGLDTVPVPCGIGPKMDGMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 THMLYSMLQGLDTVPVPCGIGPKMDGMTEWGNVKPSVIKQTSAFVEGVKMRTYKPLMDRP 160 170 180 190 200 210 420 430 440 450 460 470 pF1KE5 KCQGLESRIQHFVRRGRIEHPHLFHEEETKAKRDCNDTLEEDNTNLETPTKRVCVDTEIK :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: CCDS73 KCQGLESRIQHFVRRGRIEHPHLFHEEETKAKRDCNDTLEEENTNLETPTKRVCVDTEIK 220 230 240 250 260 270 480 pF1KE5 SII ::: CCDS73 SII 481 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:13:15 2016 done: Tue Nov 8 05:13:16 2016 Total Scan time: 2.940 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]