FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1356, 91 aa 1>>>pF1KE1356 91 - 91 aa - 91 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5656+/-0.00026; mu= 13.3385+/- 0.016 mean_var=61.9356+/-12.265, 0's: 0 Z-trim(119.8): 7 B-trim: 0 in 0/53 Lambda= 0.162969 statistics sampled from 34225 (34232) to 34225 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.401), width: 16 Scan time: 4.380 The best scores are: opt bits E(85289) NP_003348 (OMIM: 192020) uteroglobin precursor [Ho ( 91) 577 142.8 7e-35 NP_006543 (OMIM: 615060) secretoglobin family 1D m ( 90) 160 44.8 2.3e-05 NP_006542 (OMIM: 615061) secretoglobin family 1D m ( 90) 152 42.9 8.4e-05 NP_996881 (OMIM: 615062) secretoglobin family 1D m ( 83) 141 40.3 0.00047 >>NP_003348 (OMIM: 192020) uteroglobin precursor [Homo s (91 aa) initn: 577 init1: 577 opt: 577 Z-score: 747.2 bits: 142.8 E(85289): 7e-35 Smith-Waterman score: 577; 100.0% identity (100.0% similar) in 91 aa overlap (1-91:1-91) 10 20 30 40 50 60 pF1KE1 MKLAVTLTLVTLALCCSSASAEICPSFQRVIETLLMDTPSSYEAAMELFSPDQDMREAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MKLAVTLTLVTLALCCSSASAEICPSFQRVIETLLMDTPSSYEAAMELFSPDQDMREAGA 10 20 30 40 50 60 70 80 90 pF1KE1 QLKKLVDTLPQKPRESIIKLMEKIAQSSLCN ::::::::::::::::::::::::::::::: NP_003 QLKKLVDTLPQKPRESIIKLMEKIAQSSLCN 70 80 90 >>NP_006543 (OMIM: 615060) secretoglobin family 1D membe (90 aa) initn: 143 init1: 129 opt: 160 Z-score: 217.4 bits: 44.8 E(85289): 2.3e-05 Smith-Waterman score: 160; 33.0% identity (57.1% similar) in 91 aa overlap (1-91:1-89) 10 20 30 40 50 60 pF1KE1 MKLAVTLTLVTLALCCSSASAEICPSFQRVIETLLMDTPSSYEAAMELFSPDQDMREAGA :.:.: : :.:::::: :.: .: .. : .:. .. . :. . : NP_006 MRLSVCLLLLTLALCCYRANAVVCQALGSEITGFLLAGKPVFKFQLAKFKAPLEAVAAKM 10 20 30 40 50 60 70 80 90 pF1KE1 QLKKLVDTLPQKPRESIIKLMEKIAQSSLCN ..:: :::. . : : : . :::.. :. NP_006 EVKKCVDTMAYEKRVLITKTLGKIAEK--CDR 70 80 90 >>NP_006542 (OMIM: 615061) secretoglobin family 1D membe (90 aa) initn: 149 init1: 149 opt: 152 Z-score: 207.2 bits: 42.9 E(85289): 8.4e-05 Smith-Waterman score: 152; 31.8% identity (65.9% similar) in 85 aa overlap (1-84:1-84) 10 20 30 40 50 pF1KE1 MKLAVTLTLVTLALCCSSASAEICPSF-QRVIETLLMDTPSSYEAAMELFSPDQDMREAG :::.: : :::::::: .:.::.::.. ..... .... : .. .. :. . : NP_006 MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPL-FKLSLAKFDAPPEAVAAK 10 20 30 40 50 60 70 80 90 pF1KE1 AQLKKLVDTLPQKPRESIIKLMEKIAQSSLCN .:. .: . . : : ... :: NP_006 LGVKRCTDQMSLQKRSLIAEVLVKILKKCSV 60 70 80 90 >>NP_996881 (OMIM: 615062) secretoglobin family 1D membe (83 aa) initn: 73 init1: 73 opt: 141 Z-score: 193.7 bits: 40.3 E(85289): 0.00047 Smith-Waterman score: 141; 30.4% identity (60.8% similar) in 79 aa overlap (1-79:1-79) 10 20 30 40 50 60 pF1KE1 MKLAVTLTLVTLALCCSSASAEICPSFQRVIETLLMDTPSSYEAAMELFSPDQDMREAGA :.:.: : .:.::::: .: : .::. : ..:. . .. . . ..: . : NP_996 MRLSVCLLMVSLALCCYQAHALVCPAVASEITVFLFLSDAAVNLQVAKLNPPPEALAAKL 10 20 30 40 50 60 70 80 90 pF1KE1 QLKKLVDTLPQKPRESIIKLMEKIAQSSLCN ..:. .: . : : :. : NP_996 EVKHCTDQISFKKRLSLKKSWWK 70 80 91 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:18:11 2016 done: Sun Nov 6 23:18:12 2016 Total Scan time: 4.380 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]