Result of FASTA (omim) for
pFN21AB6420
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6420, 339 aa
1>>>pF1KB6420 339 - 339 aa - 339 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8853+/-0.000336; mu= 10.2829+/- 0.021
mean_var=125.3315+/-24.754, 0's: 0 Z-trim(118.3): 5 B-trim: 1044 in 1/54
Lambda= 0.114563
statistics sampled from 31158 (31163) to 31158 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.365), width: 16
Scan time: 8.860
The best scores are: opt bits E(85289)
XP_016884978 (OMIM: 300139,300472) PREDICTED: immu ( 339) 2232 379.7 5e-105
NP_001542 (OMIM: 300139,300472) immunoglobulin-bin ( 339) 2232 379.7 5e-105
XP_016884979 (OMIM: 300139,300472) PREDICTED: immu ( 174) 1044 183.1 3.8e-46
>>XP_016884978 (OMIM: 300139,300472) PREDICTED: immunogl (339 aa)
initn: 2232 init1: 2232 opt: 2232 Z-score: 2006.6 bits: 379.7 E(85289): 5e-105
Smith-Waterman score: 2232; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KB6 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRQERPPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRQERPPV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 KPFILTRNMAQAKVFGAGYPSLPTMTVSDWYEQHRKYGALPDQGIAKAAPEEFRKAAQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KPFILTRNMAQAKVFGAGYPSLPTMTVSDWYEQHRKYGALPDQGIAKAAPEEFRKAAQQQ
250 260 270 280 290 300
310 320 330
pF1KB6 EEQEEKEEEDDEQTLHRAREWDDWKDTHPRGYGNRQNMG
:::::::::::::::::::::::::::::::::::::::
XP_016 EEQEEKEEEDDEQTLHRAREWDDWKDTHPRGYGNRQNMG
310 320 330
>>NP_001542 (OMIM: 300139,300472) immunoglobulin-binding (339 aa)
initn: 2232 init1: 2232 opt: 2232 Z-score: 2006.6 bits: 379.7 E(85289): 5e-105
Smith-Waterman score: 2232; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KB6 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRQERPPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRQERPPV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 KPFILTRNMAQAKVFGAGYPSLPTMTVSDWYEQHRKYGALPDQGIAKAAPEEFRKAAQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPFILTRNMAQAKVFGAGYPSLPTMTVSDWYEQHRKYGALPDQGIAKAAPEEFRKAAQQQ
250 260 270 280 290 300
310 320 330
pF1KB6 EEQEEKEEEDDEQTLHRAREWDDWKDTHPRGYGNRQNMG
:::::::::::::::::::::::::::::::::::::::
NP_001 EEQEEKEEEDDEQTLHRAREWDDWKDTHPRGYGNRQNMG
310 320 330
>>XP_016884979 (OMIM: 300139,300472) PREDICTED: immunogl (174 aa)
initn: 1039 init1: 1039 opt: 1044 Z-score: 949.5 bits: 183.1 E(85289): 3.8e-46
Smith-Waterman score: 1044; 95.3% identity (97.7% similar) in 171 aa overlap (1-171:1-171)
10 20 30 40 50 60
pF1KB6 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE
:::::::::::::::::::::::::::::::::::::::::.. .: .:
XP_016 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRHQLLTHLARRGLQ
130 140 150 160 170
190 200 210 220 230 240
pF1KB6 SGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRQERPPV
339 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:50:23 2016 done: Fri Nov 4 17:50:24 2016
Total Scan time: 8.860 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]