FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6420, 339 aa
  1>>>pF1KB6420 339 - 339 aa - 339 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0959+/-0.000872; mu= 8.9161+/- 0.053
 mean_var=115.6129+/-23.172, 0's: 0 Z-trim(110.6): 6  B-trim: 415 in 2/51
 Lambda= 0.119281
 statistics sampled from 11704 (11706) to 11704 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.36), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS14396.1 IGBP1 gene_id:3476|Hs108|chrX          ( 339) 2232 394.6 6.3e-110


>>CCDS14396.1 IGBP1 gene_id:3476|Hs108|chrX               (339 aa)
 initn: 2232 init1: 2232 opt: 2232  Z-score: 2087.1  bits: 394.6 E(32554): 6.3e-110
Smith-Waterman score: 2232; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB6 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRQERPPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRQERPPV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 KPFILTRNMAQAKVFGAGYPSLPTMTVSDWYEQHRKYGALPDQGIAKAAPEEFRKAAQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KPFILTRNMAQAKVFGAGYPSLPTMTVSDWYEQHRKYGALPDQGIAKAAPEEFRKAAQQQ
              250       260       270       280       290       300

              310       320       330         
pF1KB6 EEQEEKEEEDDEQTLHRAREWDDWKDTHPRGYGNRQNMG
       :::::::::::::::::::::::::::::::::::::::
CCDS14 EEQEEKEEEDDEQTLHRAREWDDWKDTHPRGYGNRQNMG
              310       320       330         




339 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:50:22 2016 done: Fri Nov  4 17:50:23 2016
 Total Scan time:  2.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]