FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7517, 110 aa 1>>>pF1KB7517 110 - 110 aa - 110 aa Library: /omim/omim.rfq.tfa 63214209 residues in 88908 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.5525+/-0.000391; mu= -8.7255+/- 0.025 mean_var=321.6052+/-62.379, 0's: 0 Z-trim(122.4): 37 B-trim: 101 in 1/56 Lambda= 0.071518 statistics sampled from 41178 (41245) to 41178 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.464), width: 16 Scan time: 5.290 The best scores are: opt bits E(88908) NP_002814 (OMIM: 188390) prothymosin alpha isoform ( 110) 703 84.3 4.5e-17 NP_001092755 (OMIM: 188390) prothymosin alpha isof ( 111) 691 83.1 1.1e-16 XP_011509823 (OMIM: 188390) PREDICTED: prothymosin ( 261) 626 76.8 2e-14 XP_011509821 (OMIM: 188390) PREDICTED: prothymosin ( 262) 623 76.4 2.5e-14 XP_011509822 (OMIM: 188390) PREDICTED: prothymosin ( 262) 614 75.5 4.7e-14 XP_011509820 (OMIM: 188390) PREDICTED: prothymosin ( 263) 611 75.2 5.9e-14 >>NP_002814 (OMIM: 188390) prothymosin alpha isoform 2 [ (110 aa) initn: 703 init1: 703 opt: 703 Z-score: 427.8 bits: 84.3 E(88908): 4.5e-17 Smith-Waterman score: 703; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110) 10 20 30 40 50 60 pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNANEENGEQEADNEVDEEEEEGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNANEENGEQEADNEVDEEEEEGG 10 20 30 40 50 60 70 80 90 100 110 pF1KB7 EEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKQKTDEDD :::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 EEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKQKTDEDD 70 80 90 100 110 >>NP_001092755 (OMIM: 188390) prothymosin alpha isoform (111 aa) initn: 465 init1: 465 opt: 691 Z-score: 421.1 bits: 83.1 E(88908): 1.1e-16 Smith-Waterman score: 691; 99.1% identity (99.1% similar) in 111 aa overlap (1-110:1-111) 10 20 30 40 50 pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNA-NEENGEQEADNEVDEEEEEG ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: NP_001 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNAENEENGEQEADNEVDEEEEEG 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB7 GEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKQKTDEDD ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKQKTDEDD 70 80 90 100 110 >>XP_011509823 (OMIM: 188390) PREDICTED: prothymosin alp (261 aa) initn: 623 init1: 623 opt: 626 Z-score: 380.3 bits: 76.8 E(88908): 2e-14 Smith-Waterman score: 626; 92.4% identity (95.2% similar) in 105 aa overlap (6-110:157-261) 10 20 30 pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPA .: . : .:::::::::::::::::::: XP_011 FPQARTPDLCWYWWPCRVEKVTGRPGPRCLLDPGRSPTPEDLKEKKEVVEEAENGRDAPA 130 140 150 160 170 180 40 50 60 70 80 90 pF1KB7 NGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDE 190 200 210 220 230 240 100 110 pF1KB7 DDDVDTKKQKTDEDD ::::::::::::::: XP_011 DDDVDTKKQKTDEDD 250 260 >>XP_011509821 (OMIM: 188390) PREDICTED: prothymosin alp (262 aa) initn: 623 init1: 623 opt: 623 Z-score: 378.6 bits: 76.4 E(88908): 2.5e-14 Smith-Waterman score: 623; 99.0% identity (100.0% similar) in 97 aa overlap (14-110:166-262) 10 20 30 40 pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNANEEN :.:::::::::::::::::::::::::::: XP_011 AGRAGLRGPTGGPEPLAGQRPRGSRRPGRRTSDLKEKKEVVEEAENGRDAPANGNANEEN 140 150 160 170 180 190 50 60 70 80 90 100 pF1KB7 GEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKK 200 210 220 230 240 250 110 pF1KB7 QKTDEDD ::::::: XP_011 QKTDEDD 260 >>XP_011509822 (OMIM: 188390) PREDICTED: prothymosin alp (262 aa) initn: 465 init1: 465 opt: 614 Z-score: 373.6 bits: 75.5 E(88908): 4.7e-14 Smith-Waterman score: 614; 91.5% identity (94.3% similar) in 106 aa overlap (6-110:157-262) 10 20 30 pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPA .: . : .:::::::::::::::::::: XP_011 FPQARTPDLCWYWWPCRVEKVTGRPGPRCLLDPGRSPTPEDLKEKKEVVEEAENGRDAPA 130 140 150 160 170 180 40 50 60 70 80 90 pF1KB7 NGNA-NEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDD :::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NGNAENEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDD 190 200 210 220 230 240 100 110 pF1KB7 EDDDVDTKKQKTDEDD :::::::::::::::: XP_011 EDDDVDTKKQKTDEDD 250 260 >>XP_011509820 (OMIM: 188390) PREDICTED: prothymosin alp (263 aa) initn: 465 init1: 465 opt: 611 Z-score: 371.9 bits: 75.2 E(88908): 5.9e-14 Smith-Waterman score: 611; 98.0% identity (99.0% similar) in 98 aa overlap (14-110:166-263) 10 20 30 40 pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNA-NEE :.:::::::::::::::::::::::: ::: XP_011 AGRAGLRGPTGGPEPLAGQRPRGSRRPGRRTSDLKEKKEVVEEAENGRDAPANGNAENEE 140 150 160 170 180 190 50 60 70 80 90 100 pF1KB7 NGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTK 200 210 220 230 240 250 110 pF1KB7 KQKTDEDD :::::::: XP_011 KQKTDEDD 260 110 residues in 1 query sequences 63214209 residues in 88908 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Sep 21 11:31:50 2017 done: Thu Sep 21 11:31:50 2017 Total Scan time: 5.290 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]