FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3624, 605 aa 1>>>pF1KE3624 605 - 605 aa - 605 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3778+/-0.000384; mu= 14.8653+/- 0.024 mean_var=118.2074+/-23.224, 0's: 0 Z-trim(117.0): 227 B-trim: 808 in 1/52 Lambda= 0.117965 statistics sampled from 28312 (28587) to 28312 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.335), width: 16 Scan time: 8.420 The best scores are: opt bits E(85289) XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 4107 710.4 4.5e-204 XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 4107 710.4 4.5e-204 NP_004196 (OMIM: 604725) ubiquitin carboxyl-termin ( 605) 4107 710.4 4.5e-204 NP_001230688 (OMIM: 604725) ubiquitin carboxyl-ter ( 362) 2399 419.5 9.7e-117 XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin c ( 352) 2381 416.4 8e-116 NP_741994 (OMIM: 604725) ubiquitin carboxyl-termin ( 396) 2381 416.5 8.7e-116 XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 929 169.7 4e-41 XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 929 169.7 4e-41 NP_001269978 (OMIM: 603158) ubiquitin carboxyl-ter (1012) 929 169.7 4.3e-41 XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 929 169.7 4.5e-41 XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 929 169.7 4.5e-41 XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 929 169.7 4.5e-41 XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 929 169.7 4.5e-41 NP_005145 (OMIM: 603158) ubiquitin carboxyl-termin (1118) 929 169.7 4.6e-41 NP_001122082 (OMIM: 603158) ubiquitin carboxyl-ter (1118) 929 169.7 4.6e-41 XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 929 169.7 4.6e-41 XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 929 169.7 4.6e-41 NP_036607 (OMIM: 604729) ubiquitin carboxyl-termin ( 565) 789 145.7 4.1e-34 NP_001014443 (OMIM: 604729) ubiquitin carboxyl-ter ( 565) 789 145.7 4.1e-34 XP_016856529 (OMIM: 604729) PREDICTED: ubiquitin c ( 594) 789 145.7 4.3e-34 NP_001306776 (OMIM: 604729) ubiquitin carboxyl-ter ( 594) 789 145.7 4.3e-34 NP_001306777 (OMIM: 604729) ubiquitin carboxyl-ter ( 551) 557 106.2 3.1e-22 NP_006304 (OMIM: 604731) ubiquitin carboxyl-termin ( 952) 560 106.9 3.3e-22 XP_006719781 (OMIM: 604731) PREDICTED: ubiquitin c ( 775) 554 105.8 5.7e-22 XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 554 105.8 6.2e-22 XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 554 105.8 6.2e-22 NP_001239007 (OMIM: 604731) ubiquitin carboxyl-ter ( 981) 554 105.9 6.8e-22 NP_955475 (OMIM: 603486) ubiquitin carboxyl-termin ( 916) 548 104.8 1.3e-21 NP_003354 (OMIM: 603486) ubiquitin carboxyl-termin ( 963) 539 103.3 4e-21 XP_011522361 (OMIM: 604334) PREDICTED: ubiquitin c ( 786) 524 100.7 2e-20 XP_011522360 (OMIM: 604334) PREDICTED: ubiquitin c (1031) 524 100.8 2.4e-20 XP_011522359 (OMIM: 604334) PREDICTED: ubiquitin c (1384) 524 100.9 3.1e-20 NP_001291213 (OMIM: 604334) ubiquitin carboxyl-ter (1406) 524 100.9 3.1e-20 NP_004496 (OMIM: 604334) ubiquitin carboxyl-termin (1406) 524 100.9 3.1e-20 XP_011522356 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20 XP_011522354 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20 XP_011522352 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20 XP_016880779 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20 XP_011522358 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20 XP_011522355 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20 XP_011522357 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20 XP_011522353 (OMIM: 604334) PREDICTED: ubiquitin c (1406) 524 100.9 3.1e-20 XP_016880723 (OMIM: 607740) PREDICTED: ubiquitin c (1288) 521 100.3 4.1e-20 NP_004642 (OMIM: 300050) ubiquitin carboxyl-termin ( 963) 519 99.9 4.2e-20 XP_011523681 (OMIM: 607740) PREDICTED: ubiquitin c (1327) 521 100.4 4.2e-20 XP_016880722 (OMIM: 607740) PREDICTED: ubiquitin c (1558) 521 100.4 4.8e-20 XP_011523680 (OMIM: 607740) PREDICTED: ubiquitin c (1572) 521 100.4 4.8e-20 XP_011523678 (OMIM: 607740) PREDICTED: ubiquitin c (1601) 521 100.4 4.9e-20 NP_115971 (OMIM: 607740) ubiquitin carboxyl-termin (1604) 521 100.4 4.9e-20 XP_011523677 (OMIM: 607740) PREDICTED: ubiquitin c (1608) 521 100.4 4.9e-20 >>XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin carbo (605 aa) initn: 4107 init1: 4107 opt: 4107 Z-score: 3784.8 bits: 710.4 E(85289): 4.5e-204 Smith-Waterman score: 4107; 100.0% identity (100.0% similar) in 605 aa overlap (1-605:1-605) 10 20 30 40 50 60 pF1KE3 MSQLSSTLKRYTESARYTDAHYAKSGYGAYTPSSYGANLAASLLEKEKLGFKPVPTSSFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MSQLSSTLKRYTESARYTDAHYAKSGYGAYTPSSYGANLAASLLEKEKLGFKPVPTSSFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TRPRTYGPSSLLDYDRGRPLLRPDITGGGKRAESQTRGTERPLGSGLSGGSGFPYGVTNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TRPRTYGPSSLLDYDRGRPLLRPDITGGGKRAESQTRGTERPLGSGLSGGSGFPYGVTNN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 CLSYLPINAYDQGVTLTQKLDSQSDLARDFSSLRTSDSYRIDPRNLGRSPMLARTRKELC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CLSYLPINAYDQGVTLTQKLDSQSDLARDFSSLRTSDSYRIDPRNLGRSPMLARTRKELC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 TLQGLYQTASCPEYLVDYLENYGRKGSASQVPSQAPPSRVPEIISPTYRPIGRYTLWETG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TLQGLYQTASCPEYLVDYLENYGRKGSASQVPSQAPPSRVPEIISPTYRPIGRYTLWETG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 KGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLY 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 MRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 FLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 FLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCR 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 GRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS 550 560 570 580 590 600 pF1KE3 PPSRM ::::: XP_005 PPSRM >>XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin carbo (605 aa) initn: 4107 init1: 4107 opt: 4107 Z-score: 3784.8 bits: 710.4 E(85289): 4.5e-204 Smith-Waterman score: 4107; 100.0% identity (100.0% similar) in 605 aa overlap (1-605:1-605) 10 20 30 40 50 60 pF1KE3 MSQLSSTLKRYTESARYTDAHYAKSGYGAYTPSSYGANLAASLLEKEKLGFKPVPTSSFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MSQLSSTLKRYTESARYTDAHYAKSGYGAYTPSSYGANLAASLLEKEKLGFKPVPTSSFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TRPRTYGPSSLLDYDRGRPLLRPDITGGGKRAESQTRGTERPLGSGLSGGSGFPYGVTNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TRPRTYGPSSLLDYDRGRPLLRPDITGGGKRAESQTRGTERPLGSGLSGGSGFPYGVTNN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 CLSYLPINAYDQGVTLTQKLDSQSDLARDFSSLRTSDSYRIDPRNLGRSPMLARTRKELC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CLSYLPINAYDQGVTLTQKLDSQSDLARDFSSLRTSDSYRIDPRNLGRSPMLARTRKELC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 TLQGLYQTASCPEYLVDYLENYGRKGSASQVPSQAPPSRVPEIISPTYRPIGRYTLWETG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TLQGLYQTASCPEYLVDYLENYGRKGSASQVPSQAPPSRVPEIISPTYRPIGRYTLWETG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 KGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLY 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 MRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 FLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 FLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCR 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 GRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS 550 560 570 580 590 600 pF1KE3 PPSRM ::::: XP_005 PPSRM >>NP_004196 (OMIM: 604725) ubiquitin carboxyl-terminal h (605 aa) initn: 4107 init1: 4107 opt: 4107 Z-score: 3784.8 bits: 710.4 E(85289): 4.5e-204 Smith-Waterman score: 4107; 100.0% identity (100.0% similar) in 605 aa overlap (1-605:1-605) 10 20 30 40 50 60 pF1KE3 MSQLSSTLKRYTESARYTDAHYAKSGYGAYTPSSYGANLAASLLEKEKLGFKPVPTSSFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MSQLSSTLKRYTESARYTDAHYAKSGYGAYTPSSYGANLAASLLEKEKLGFKPVPTSSFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TRPRTYGPSSLLDYDRGRPLLRPDITGGGKRAESQTRGTERPLGSGLSGGSGFPYGVTNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 TRPRTYGPSSLLDYDRGRPLLRPDITGGGKRAESQTRGTERPLGSGLSGGSGFPYGVTNN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 CLSYLPINAYDQGVTLTQKLDSQSDLARDFSSLRTSDSYRIDPRNLGRSPMLARTRKELC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 CLSYLPINAYDQGVTLTQKLDSQSDLARDFSSLRTSDSYRIDPRNLGRSPMLARTRKELC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 TLQGLYQTASCPEYLVDYLENYGRKGSASQVPSQAPPSRVPEIISPTYRPIGRYTLWETG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 TLQGLYQTASCPEYLVDYLENYGRKGSASQVPSQAPPSRVPEIISPTYRPIGRYTLWETG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 KGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLY 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 MRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 FLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 FLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCR 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 GRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 GRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAV 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 YNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS 550 560 570 580 590 600 pF1KE3 PPSRM ::::: NP_004 PPSRM >>NP_001230688 (OMIM: 604725) ubiquitin carboxyl-termina (362 aa) initn: 2381 init1: 2381 opt: 2399 Z-score: 2216.8 bits: 419.5 E(85289): 9.7e-117 Smith-Waterman score: 2399; 97.5% identity (98.1% similar) in 361 aa overlap (245-605:4-362) 220 230 240 250 260 270 pF1KE3 APPSRVPEIISPTYRPIGRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGN :: .: : : .:::::::::::::::: NP_001 MLVPGSTRPYSKKR--QNSKSAQGLAGLRNLGN 10 20 30 280 290 300 310 320 330 pF1KE3 TCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVV 40 50 60 70 80 90 340 350 360 370 380 390 pF1KE3 SPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDE 100 110 120 130 140 150 400 410 420 430 440 450 pF1KE3 KGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVT 160 170 180 190 200 210 460 470 480 490 500 510 pF1KE3 LMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSK 220 230 240 250 260 270 520 530 540 550 560 570 pF1KE3 LTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFN 280 290 300 310 320 330 580 590 600 pF1KE3 DSSVTPMSSSQVRTSDAYLLFYELASPPSRM ::::::::::::::::::::::::::::::: NP_001 DSSVTPMSSSQVRTSDAYLLFYELASPPSRM 340 350 360 >>XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin carbo (352 aa) initn: 2381 init1: 2381 opt: 2381 Z-score: 2200.4 bits: 416.4 E(85289): 8e-116 Smith-Waterman score: 2381; 100.0% identity (100.0% similar) in 347 aa overlap (259-605:6-352) 230 240 250 260 270 280 pF1KE3 RPIGRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNT :::::::::::::::::::::::::::::: XP_016 MPPPQNSKSAQGLAGLRNLGNTCFMNSILQCLSNT 10 20 30 290 300 310 320 330 340 pF1KE3 RELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP 40 50 60 70 80 90 350 360 370 380 390 400 pF1KE3 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED 100 110 120 130 140 150 410 420 430 440 450 460 pF1KE3 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL 160 170 180 190 200 210 470 480 490 500 510 520 pF1KE3 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL 220 230 240 250 260 270 530 540 550 560 570 580 pF1KE3 REFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 REFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRT 280 290 300 310 320 330 590 600 pF1KE3 SDAYLLFYELASPPSRM ::::::::::::::::: XP_016 SDAYLLFYELASPPSRM 340 350 >>NP_741994 (OMIM: 604725) ubiquitin carboxyl-terminal h (396 aa) initn: 2381 init1: 2381 opt: 2381 Z-score: 2199.7 bits: 416.5 E(85289): 8.7e-116 Smith-Waterman score: 2381; 100.0% identity (100.0% similar) in 347 aa overlap (259-605:50-396) 230 240 250 260 270 280 pF1KE3 RPIGRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNT :::::::::::::::::::::::::::::: NP_741 ALAKELRPRSPLSPSLLLSTFVGLLLNKAKNSKSAQGLAGLRNLGNTCFMNSILQCLSNT 20 30 40 50 60 70 290 300 310 320 330 340 pF1KE3 RELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_741 RELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP 80 90 100 110 120 130 350 360 370 380 390 400 pF1KE3 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_741 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED 140 150 160 170 180 190 410 420 430 440 450 460 pF1KE3 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_741 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL 200 210 220 230 240 250 470 480 490 500 510 520 pF1KE3 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_741 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL 260 270 280 290 300 310 530 540 550 560 570 580 pF1KE3 REFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_741 REFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRT 320 330 340 350 360 370 590 600 pF1KE3 SDAYLLFYELASPPSRM ::::::::::::::::: NP_741 SDAYLLFYELASPPSRM 380 390 >>XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa) initn: 818 init1: 323 opt: 929 Z-score: 859.2 bits: 169.7 E(85289): 4e-41 Smith-Waterman score: 929; 43.0% identity (71.5% similar) in 344 aa overlap (262-601:582-921) 240 250 260 270 280 290 pF1KE3 GRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTREL :. .:.:::::::::.:::::::: :. .: XP_016 RENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHL 560 570 580 590 600 610 300 310 320 330 340 pF1KE3 RDYCLQRLYMRDLHHGSN--AHTALV-EEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP :: . :. :... :: .: . : :::. .....::.. .::..:: : . XP_016 ADYFNRNCYQDDINR-SNLLGHKGEVAEEFGIIMKALWTGQ-YRYISPKDFKITIGKIND 620 630 640 650 660 350 360 370 380 390 400 pF1KE3 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED .:.::.:::.::.: ::.::::...:.. : . . :: ::: : . ... :.:. . .. XP_016 QFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNE 670 680 690 700 710 720 410 420 430 440 450 460 pF1KE3 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL : : :: ::.::.. : : : .:. : ::::.:. . . ::.::.:::.::. : XP_016 SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS--KCTLQDCLRLFSKEEKL 730 740 750 760 770 780 470 480 490 500 510 520 pF1KE3 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL ... : .::.:. .::. : ..: .:..:::::: . .:: : :.:::..::: XP_016 TDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDL 790 800 810 820 830 840 530 540 550 560 570 580 pF1KE3 REFA-SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVR ... . ..: :::..:::: : ::::::::.. . .: :.: :. .: :.:. XP_016 SQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK 850 860 870 880 890 900 590 600 pF1KE3 TSDAYLLFYELASPPSRM .: ::.::: .: XP_016 SSAAYILFYTSLGPRVTDVAT 910 920 >>XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa) initn: 818 init1: 323 opt: 929 Z-score: 859.2 bits: 169.7 E(85289): 4e-41 Smith-Waterman score: 929; 43.0% identity (71.5% similar) in 344 aa overlap (262-601:582-921) 240 250 260 270 280 290 pF1KE3 GRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTREL :. .:.:::::::::.:::::::: :. .: XP_016 RENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHL 560 570 580 590 600 610 300 310 320 330 340 pF1KE3 RDYCLQRLYMRDLHHGSN--AHTALV-EEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP :: . :. :... :: .: . : :::. .....::.. .::..:: : . XP_016 ADYFNRNCYQDDINR-SNLLGHKGEVAEEFGIIMKALWTGQ-YRYISPKDFKITIGKIND 620 630 640 650 660 350 360 370 380 390 400 pF1KE3 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED .:.::.:::.::.: ::.::::...:.. : . . :: ::: : . ... :.:. . .. XP_016 QFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNE 670 680 690 700 710 720 410 420 430 440 450 460 pF1KE3 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL : : :: ::.::.. : : : .:. : ::::.:. . . ::.::.:::.::. : XP_016 SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS--KCTLQDCLRLFSKEEKL 730 740 750 760 770 780 470 480 490 500 510 520 pF1KE3 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL ... : .::.:. .::. : ..: .:..:::::: . .:: : :.:::..::: XP_016 TDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDL 790 800 810 820 830 840 530 540 550 560 570 580 pF1KE3 REFA-SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVR ... . ..: :::..:::: : ::::::::.. . .: :.: :. .: :.:. XP_016 SQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK 850 860 870 880 890 900 590 600 pF1KE3 TSDAYLLFYELASPPSRM .: ::.::: .: XP_016 SSAAYILFYTSLGPRVTDVAT 910 920 >>NP_001269978 (OMIM: 603158) ubiquitin carboxyl-termina (1012 aa) initn: 818 init1: 323 opt: 929 Z-score: 858.7 bits: 169.7 E(85289): 4.3e-41 Smith-Waterman score: 929; 43.0% identity (71.5% similar) in 344 aa overlap (262-601:666-1005) 240 250 260 270 280 290 pF1KE3 GRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTREL :. .:.:::::::::.:::::::: :. .: NP_001 RENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHL 640 650 660 670 680 690 300 310 320 330 340 pF1KE3 RDYCLQRLYMRDLHHGSN--AHTALV-EEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP :: . :. :... :: .: . : :::. .....::.. .::..:: : . NP_001 ADYFNRNCYQDDINR-SNLLGHKGEVAEEFGIIMKALWTGQ-YRYISPKDFKITIGKIND 700 710 720 730 740 750 350 360 370 380 390 400 pF1KE3 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED .:.::.:::.::.: ::.::::...:.. : . . :: ::: : . ... :.:. . .. NP_001 QFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNE 760 770 780 790 800 810 410 420 430 440 450 460 pF1KE3 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL : : :: ::.::.. : : : .:. : ::::.:. . . ::.::.:::.::. : NP_001 SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS--KCTLQDCLRLFSKEEKL 820 830 840 850 860 870 470 480 490 500 510 520 pF1KE3 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL ... : .::.:. .::. : ..: .:..:::::: . .:: : :.:::..::: NP_001 TDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDL 880 890 900 910 920 930 530 540 550 560 570 580 pF1KE3 REFA-SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVR ... . ..: :::..:::: : ::::::::.. . .: :.: :. .: :.:. NP_001 SQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK 940 950 960 970 980 990 590 600 pF1KE3 TSDAYLLFYELASPPSRM .: ::.::: .: NP_001 SSAAYILFYTSLGPRVTDVAT 1000 1010 >>XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa) initn: 818 init1: 323 opt: 929 Z-score: 858.3 bits: 169.7 E(85289): 4.5e-41 Smith-Waterman score: 929; 43.0% identity (71.5% similar) in 344 aa overlap (262-601:743-1082) 240 250 260 270 280 290 pF1KE3 GRYTLWETGKGQAPGPSRSSSPGRDGMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTREL :. .:.:::::::::.:::::::: :. .: XP_016 RENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHL 720 730 740 750 760 770 300 310 320 330 340 pF1KE3 RDYCLQRLYMRDLHHGSN--AHTALV-EEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAP :: . :. :... :: .: . : :::. .....::.. .::..:: : . XP_016 ADYFNRNCYQDDINR-SNLLGHKGEVAEEFGIIMKALWTGQ-YRYISPKDFKITIGKIND 780 790 800 810 820 830 350 360 370 380 390 400 pF1KE3 RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLERED .:.::.:::.::.: ::.::::...:.. : . . :: ::: : . ... :.:. . .. XP_016 QFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNE 840 850 860 870 880 890 410 420 430 440 450 460 pF1KE3 SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVL : : :: ::.::.. : : : .:. : ::::.:. . . ::.::.:::.::. : XP_016 SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS--KCTLQDCLRLFSKEEKL 900 910 920 930 940 470 480 490 500 510 520 pF1KE3 DGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDL ... : .::.:. .::. : ..: .:..:::::: . .:: : :.:::..::: XP_016 TDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDL 950 960 970 980 990 1000 530 540 550 560 570 580 pF1KE3 REFA-SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVR ... . ..: :::..:::: : ::::::::.. . .: :.: :. .: :.:. XP_016 SQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK 1010 1020 1030 1040 1050 1060 590 600 pF1KE3 TSDAYLLFYELASPPSRM .: ::.::: .: XP_016 SSAAYILFYTSLGPRVTDVAT 1070 1080 605 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:21:35 2016 done: Sun Nov 6 23:21:36 2016 Total Scan time: 8.420 Total Display time: 0.100 Function used was FASTA [36.3.4 Apr, 2011]