FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6324, 438 aa 1>>>pF1KE6324 438 - 438 aa - 438 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.1388+/-0.000357; mu= 23.8788+/- 0.022 mean_var=60.8675+/-12.500, 0's: 0 Z-trim(113.6): 12 B-trim: 4 in 1/50 Lambda= 0.164392 statistics sampled from 23070 (23075) to 23070 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.271), width: 16 Scan time: 5.210 The best scores are: opt bits E(85289) NP_005778 (OMIM: 601110,608750) dol-P-Man:Man(5)Gl ( 438) 3014 723.5 2.7e-208 XP_011510625 (OMIM: 601110,608750) PREDICTED: dol- ( 398) 2563 616.5 4e-176 NP_001006942 (OMIM: 601110,608750) dol-P-Man:Man(5 ( 390) 2562 616.2 4.6e-176 XP_011510624 (OMIM: 601110,608750) PREDICTED: dol- ( 405) 2562 616.2 4.8e-176 >>NP_005778 (OMIM: 601110,608750) dol-P-Man:Man(5)GlcNAc (438 aa) initn: 3014 init1: 3014 opt: 3014 Z-score: 3860.5 bits: 723.5 E(85289): 2.7e-208 Smith-Waterman score: 3014; 100.0% identity (100.0% similar) in 438 aa overlap (1-438:1-438) 10 20 30 40 50 60 pF1KE6 MAAGLRKRGRSGSAAQAEGLCKQWLQRAWQERRLLLREPRYTLLVAACLCLAEVGITFWV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MAAGLRKRGRSGSAAQAEGLCKQWLQRAWQERRLLLREPRYTLLVAACLCLAEVGITFWV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATSRGTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATSRGTD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 IRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 IRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 LLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAPGLLFLLLTQFGFRGALPKLGICAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAPGLLFLLLTQFGFRGALPKLGICAG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 LQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNWRFLPEALFLHRAFHLALLTAHLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNWRFLPEALFLHRAFHLALLTAHLTL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 LLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFSRSLHYQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFSRSLHYQF 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 YVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSWNTYPSTSCSSAALHICHAVILLQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 YVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSWNTYPSTSCSSAALHICHAVILLQL 370 380 390 400 410 420 430 pF1KE6 WLGPQPFPKSTQHSKKAH :::::::::::::::::: NP_005 WLGPQPFPKSTQHSKKAH 430 >>XP_011510625 (OMIM: 601110,608750) PREDICTED: dol-P-Ma (398 aa) initn: 2563 init1: 2563 opt: 2563 Z-score: 3283.0 bits: 616.5 E(85289): 4e-176 Smith-Waterman score: 2563; 99.5% identity (99.5% similar) in 375 aa overlap (64-438:24-398) 40 50 60 70 80 90 pF1KE6 LLLREPRYTLLVAACLCLAEVGITFWVIHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQG : ::::::::::::::::::::::::::: XP_011 MKTGYSDRRLAWWDARHGKRNLSVEDTEIDWKAYMAEVEGVINGTYDYTQLQG 10 20 30 40 50 100 110 120 130 140 150 pF1KE6 DTGPLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DTGPLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFV 60 70 80 90 100 110 160 170 180 190 200 210 pF1KE6 FFFMCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FFFMCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLL 120 130 140 150 160 170 220 230 240 250 260 270 pF1KE6 FAPGLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FAPGLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWT 180 190 200 210 220 230 280 290 300 310 320 330 pF1KE6 VNWRFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VNWRFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPL 240 250 260 270 280 290 340 350 360 370 380 390 pF1KE6 TPNQIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TPNQIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIE 300 310 320 330 340 350 400 410 420 430 pF1KE6 LSWNTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH ::::::::::::::::::::::::::::::::::::::::::::: XP_011 LSWNTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH 360 370 380 390 >>NP_001006942 (OMIM: 601110,608750) dol-P-Man:Man(5)Glc (390 aa) initn: 2562 init1: 2562 opt: 2562 Z-score: 3281.8 bits: 616.2 E(85289): 4.6e-176 Smith-Waterman score: 2562; 100.0% identity (100.0% similar) in 372 aa overlap (67-438:19-390) 40 50 60 70 80 90 pF1KE6 REPRYTLLVAACLCLAEVGITFWVIHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTG :::::::::::::::::::::::::::::: NP_001 MFPAQAKENAGFSGCGGDTEIDWKAYMAEVEGVINGTYDYTQLQGDTG 10 20 30 40 100 110 120 130 140 150 pF1KE6 PLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFF 50 60 70 80 90 100 160 170 180 190 200 210 pF1KE6 MCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAP 110 120 130 140 150 160 220 230 240 250 260 270 pF1KE6 GLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNW 170 180 190 200 210 220 280 290 300 310 320 330 pF1KE6 RFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPN 230 240 250 260 270 280 340 350 360 370 380 390 pF1KE6 QIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSW 290 300 310 320 330 340 400 410 420 430 pF1KE6 NTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH :::::::::::::::::::::::::::::::::::::::::: NP_001 NTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH 350 360 370 380 390 >>XP_011510624 (OMIM: 601110,608750) PREDICTED: dol-P-Ma (405 aa) initn: 2562 init1: 2562 opt: 2562 Z-score: 3281.6 bits: 616.2 E(85289): 4.8e-176 Smith-Waterman score: 2562; 100.0% identity (100.0% similar) in 372 aa overlap (67-438:34-405) 40 50 60 70 80 90 pF1KE6 REPRYTLLVAACLCLAEVGITFWVIHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTG :::::::::::::::::::::::::::::: XP_011 VTQDTIKGIGSHLNQVGGVSKGFIEPPLEDTEIDWKAYMAEVEGVINGTYDYTQLQGDTG 10 20 30 40 50 60 100 110 120 130 140 150 pF1KE6 PLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFF 70 80 90 100 110 120 160 170 180 190 200 210 pF1KE6 MCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAP 130 140 150 160 170 180 220 230 240 250 260 270 pF1KE6 GLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GLLFLLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNW 190 200 210 220 230 240 280 290 300 310 320 330 pF1KE6 RFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPN 250 260 270 280 290 300 340 350 360 370 380 390 pF1KE6 QIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAMPARWLTHLLRLLVLGLIELSW 310 320 330 340 350 360 400 410 420 430 pF1KE6 NTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH :::::::::::::::::::::::::::::::::::::::::: XP_011 NTYPSTSCSSAALHICHAVILLQLWLGPQPFPKSTQHSKKAH 370 380 390 400 438 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:06:43 2016 done: Tue Nov 8 12:06:43 2016 Total Scan time: 5.210 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]