FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1366, 297 aa 1>>>pF1KE1366 297 - 297 aa - 297 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8557+/-0.000324; mu= 14.1195+/- 0.020 mean_var=87.4836+/-17.416, 0's: 0 Z-trim(117.1): 38 B-trim: 516 in 2/48 Lambda= 0.137123 statistics sampled from 28706 (28745) to 28706 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.337), width: 16 Scan time: 7.860 The best scores are: opt bits E(85289) NP_690605 (OMIM: 112210,613495) B-lymphocyte antig ( 297) 1946 394.4 1.4e-109 NP_068769 (OMIM: 112210,613495) B-lymphocyte antig ( 297) 1946 394.4 1.4e-109 NP_113645 (OMIM: 606549) membrane-spanning 4-domai ( 250) 244 57.7 2.8e-08 XP_011543419 (OMIM: 606550) PREDICTED: membrane-sp ( 267) 237 56.3 7.6e-08 NP_060186 (OMIM: 606550) membrane-spanning 4-domai ( 267) 237 56.3 7.6e-08 XP_016873398 (OMIM: 606547) PREDICTED: membrane-sp ( 220) 227 54.3 2.6e-07 NP_076926 (OMIM: 606547) membrane-spanning 4-domai ( 220) 227 54.3 2.6e-07 NP_683876 (OMIM: 606547) membrane-spanning 4-domai ( 239) 227 54.3 2.8e-07 NP_076434 (OMIM: 606499) membrane-spanning 4-domai ( 200) 202 49.3 7.4e-06 NP_001230195 (OMIM: 606547) membrane-spanning 4-do ( 186) 184 45.7 8.2e-05 NP_996776 (OMIM: 608403) membrane-spanning 4-domai ( 267) 181 45.2 0.00017 XP_011543291 (OMIM: 608403) PREDICTED: membrane-sp ( 290) 181 45.2 0.00018 NP_071744 (OMIM: 606548) membrane-spanning 4-domai ( 225) 172 43.4 0.00049 NP_690591 (OMIM: 606548) membrane-spanning 4-domai ( 248) 172 43.4 0.00054 NP_001234928 (OMIM: 606548) membrane-spanning 4-do ( 253) 172 43.4 0.00054 NP_001317204 (OMIM: 606548) membrane-spanning 4-do ( 276) 172 43.4 0.00058 XP_005274234 (OMIM: 606548) PREDICTED: membrane-sp ( 276) 172 43.4 0.00058 NP_690590 (OMIM: 606548) membrane-spanning 4-domai ( 178) 160 40.9 0.0021 NP_067024 (OMIM: 606502) membrane-spanning 4-domai ( 240) 155 40.0 0.0054 NP_996822 (OMIM: 606502) membrane-spanning 4-domai ( 240) 155 40.0 0.0054 >>NP_690605 (OMIM: 112210,613495) B-lymphocyte antigen C (297 aa) initn: 1946 init1: 1946 opt: 1946 Z-score: 2088.3 bits: 394.4 E(85289): 1.4e-109 Smith-Waterman score: 1946; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297) 10 20 30 40 50 60 pF1KE1 MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFFMRESKTLGAVQIMNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFFMRESKTLGAVQIMNG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LFHIALGGLLMIPAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 LFHIALGGLLMIPAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNSPST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 SLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNSPST 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKEQTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 QYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKEQTI 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 EIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSSP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 EIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSSP 250 260 270 280 290 >>NP_068769 (OMIM: 112210,613495) B-lymphocyte antigen C (297 aa) initn: 1946 init1: 1946 opt: 1946 Z-score: 2088.3 bits: 394.4 E(85289): 1.4e-109 Smith-Waterman score: 1946; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297) 10 20 30 40 50 60 pF1KE1 MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFFMRESKTLGAVQIMNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFFMRESKTLGAVQIMNG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LFHIALGGLLMIPAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 LFHIALGGLLMIPAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 SLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNSPST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 SLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNSPST 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKEQTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 QYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKEQTI 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 EIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSSP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 EIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSSP 250 260 270 280 290 >>NP_113645 (OMIM: 606549) membrane-spanning 4-domains s (250 aa) initn: 204 init1: 87 opt: 244 Z-score: 269.7 bits: 57.7 E(85289): 2.8e-08 Smith-Waterman score: 244; 36.9% identity (66.9% similar) in 130 aa overlap (13-138:34-160) 10 20 30 40 pF1KE1 MTTPRNSVNGTFPAEPMKGP-IAMQSGPKPLFRRMSSLVG-P : : . : . . : : . .:.. : : NP_113 MTSAVPVANSVLVVAPHNGYPVTPGIMSHVPLYPNSQPQVHLVPGNPPSL--VSNVNGQP 10 20 30 40 50 60 50 60 70 80 90 pF1KE1 TQSFFMRESKTLGAVQIMNGLFHIALGGLLM-IPAGIYAPICVTVWYPLWGGIMYIISGS .:. ..:.:::::.::. :: ::.::... . .: : : .:.:::. .::::: NP_113 VQKA-LKEGKTLGAIQIIIGLAHIGLGSIMATVLVGEYLSISFYGGFPFWGGLWFIISGS 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE1 LLAATEKNSRK-CLVKGKMIMNSLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAH : .:.:.. . ::..:.. .: .: . . :.:: : :. NP_113 LSVAAENQPYSYCLLSGSLGLNIVSAICSAVGVILFITDLSIPHPYAYPDYYPYAWGVNP 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE1 TPYINIYNCEPANPSEKNSPSTQYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKR NP_113 GMAISGVLLVFCLLEFGIACASSHFGCQLVCCQSSNVSVIYPNIYAANPVITPEPVTSPP 190 200 210 220 230 240 >>XP_011543419 (OMIM: 606550) PREDICTED: membrane-spanni (267 aa) initn: 290 init1: 168 opt: 237 Z-score: 261.8 bits: 56.3 E(85289): 7.6e-08 Smith-Waterman score: 243; 36.4% identity (67.1% similar) in 143 aa overlap (6-138:41-183) 10 20 30 pF1KE1 MTTPRNSVNGTFPAEP--MKGP-IAMQSGP-KPLF :...:. :.: . .: : .: : . . XP_011 EVNETIPNPYPPSSFMAPGFQQPLGSINLENQAQGAQRAQPYGITSPGIFASSQPGQGNI 20 30 40 50 60 70 40 50 60 70 80 pF1KE1 RRMSSLVGPTQSFFMRESKTLGAVQIMNGLFHIALGGLL-MIPAGI-----YAPICVTVW . .. :: . : .:.:.::..::: ::.::..: .: .: .. .: : XP_011 QMINPSVGTAVMNFKEEAKALGVIQIMVGLMHIGFGIVLCLISFSFREVLGFASTAVIGG 80 90 100 110 120 130 90 100 110 120 130 140 pF1KE1 YPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMNSLSLFAAISGMILSIMDILNIKISH ::.:::. .:::::: ... :. .:::::.. :: .: . :. :.:: ..:. XP_011 YPFWGGLSFIISGSLSVSASKELSRCLVKGSLGMNIVSSILAFIGVILLLVDMCINGVAG 140 150 160 170 180 190 150 160 170 180 190 200 pF1KE1 FLKMESLNFIRAHTPYINIYNCEPANPSEKNSPSTQYCYSIQSLFLGILSVMLIFAFFQE XP_011 QDYWAVLSGKGISATLMIFSLLEFFVACATAHFANQANTTTNMSVLVIPNMYESNPVTPA 200 210 220 230 240 250 >>NP_060186 (OMIM: 606550) membrane-spanning 4-domains s (267 aa) initn: 290 init1: 168 opt: 237 Z-score: 261.8 bits: 56.3 E(85289): 7.6e-08 Smith-Waterman score: 243; 36.4% identity (67.1% similar) in 143 aa overlap (6-138:41-183) 10 20 30 pF1KE1 MTTPRNSVNGTFPAEP--MKGP-IAMQSGP-KPLF :...:. :.: . .: : .: : . . NP_060 EVNETIPNPYPPSSFMAPGFQQPLGSINLENQAQGAQRAQPYGITSPGIFASSQPGQGNI 20 30 40 50 60 70 40 50 60 70 80 pF1KE1 RRMSSLVGPTQSFFMRESKTLGAVQIMNGLFHIALGGLL-MIPAGI-----YAPICVTVW . .. :: . : .:.:.::..::: ::.::..: .: .: .. .: : NP_060 QMINPSVGTAVMNFKEEAKALGVIQIMVGLMHIGFGIVLCLISFSFREVLGFASTAVIGG 80 90 100 110 120 130 90 100 110 120 130 140 pF1KE1 YPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMNSLSLFAAISGMILSIMDILNIKISH ::.:::. .:::::: ... :. .:::::.. :: .: . :. :.:: ..:. NP_060 YPFWGGLSFIISGSLSVSASKELSRCLVKGSLGMNIVSSILAFIGVILLLVDMCINGVAG 140 150 160 170 180 190 150 160 170 180 190 200 pF1KE1 FLKMESLNFIRAHTPYINIYNCEPANPSEKNSPSTQYCYSIQSLFLGILSVMLIFAFFQE NP_060 QDYWAVLSGKGISATLMIFSLLEFFVACATAHFANQANTTTNMSVLVIPNMYESNPVTPA 200 210 220 230 240 250 >>XP_016873398 (OMIM: 606547) PREDICTED: membrane-spanni (220 aa) initn: 223 init1: 150 opt: 227 Z-score: 252.3 bits: 54.3 E(85289): 2.6e-07 Smith-Waterman score: 264; 26.6% identity (55.7% similar) in 237 aa overlap (7-239:3-211) 10 20 30 40 50 pF1KE1 MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFFMR-ESKTLGAVQIMN ...: : : :: . : : ... : : : :.. : :.::.:::.. XP_016 MTTMQGMEQAMPGAGPGVPQLGNMAVIH--SHLWKGLQEKFLKGEPKVLGVVQILT 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 GLFHIALGGLLM-IPAGIYA--PICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGK .:. ...: .: . .. :. :: : . : .::..:.:::::: :. . : ::.:. XP_016 ALMSLSMGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 MIMNSLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKN . :: : : ::.... . :: : : :: : :. XP_016 LGMNITSSVLAASGILINTF--------------SLAFYSFHHPYCNYYG---------- 120 130 140 150 180 190 200 210 220 230 pF1KE1 SPSTQYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSRPKSNIVLLSAEEKK ... :.. .:...:. ...:... .. . ... : : : . ...: .. . XP_016 --NSNNCHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCCTPGGVVLILPSHSHM 160 170 180 190 200 240 250 260 270 280 290 pF1KE1 EQTIEIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSS .: XP_016 AETASPTPLNEV 210 220 >>NP_076926 (OMIM: 606547) membrane-spanning 4-domains s (220 aa) initn: 223 init1: 150 opt: 227 Z-score: 252.3 bits: 54.3 E(85289): 2.6e-07 Smith-Waterman score: 264; 26.6% identity (55.7% similar) in 237 aa overlap (7-239:3-211) 10 20 30 40 50 pF1KE1 MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFFMR-ESKTLGAVQIMN ...: : : :: . : : ... : : : :.. : :.::.:::.. NP_076 MTTMQGMEQAMPGAGPGVPQLGNMAVIH--SHLWKGLQEKFLKGEPKVLGVVQILT 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 GLFHIALGGLLM-IPAGIYA--PICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGK .:. ...: .: . .. :. :: : . : .::..:.:::::: :. . : ::.:. NP_076 ALMSLSMGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGS 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 MIMNSLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKN . :: : : ::.... . :: : : :: : :. NP_076 LGMNITSSVLAASGILINTF--------------SLAFYSFHHPYCNYYG---------- 120 130 140 150 180 190 200 210 220 230 pF1KE1 SPSTQYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSRPKSNIVLLSAEEKK ... :.. .:...:. ...:... .. . ... : : : . ...: .. . NP_076 --NSNNCHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCCTPGGVVLILPSHSHM 160 170 180 190 200 240 250 260 270 280 290 pF1KE1 EQTIEIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPEPPQDQESSPIENDSS .: NP_076 AETASPTPLNEV 210 220 >>NP_683876 (OMIM: 606547) membrane-spanning 4-domains s (239 aa) initn: 223 init1: 150 opt: 227 Z-score: 251.8 bits: 54.3 E(85289): 2.8e-07 Smith-Waterman score: 264; 26.6% identity (55.7% similar) in 237 aa overlap (7-239:22-230) 10 20 30 40 pF1KE1 MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFF ...: : : :: . : : ... : : : : NP_683 MHQTYSRHCRPEESTFSAAMTTMQGMEQAMPGAGPGVPQLGNMAVIH--SHLWKGLQEKF 10 20 30 40 50 50 60 70 80 90 100 pF1KE1 MR-ESKTLGAVQIMNGLFHIALGGLLM-IPAGIYA--PICVTVWYPLWGGIMYIISGSLL .. : :.::.:::...:. ...: .: . .. :. :: : . : .::..:.:::::: NP_683 LKGEPKVLGVVQILTALMSLSMGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLS 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE1 AATEKNSRKCLVKGKMIMNSLSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPY :. . : ::.:.. :: : : ::.... . :: : : :: NP_683 IAAGIRTTKGLVRGSLGMNITSSVLAASGILINTF--------------SLAFYSFHHPY 120 130 140 150 160 170 180 190 200 210 220 pF1KE1 INIYNCEPANPSEKNSPSTQYCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCS : :. ... :.. .:...:. ...:... .. . ... : : NP_683 CNYYG------------NSNNCHGTMSILMGLDGMVLLLSVLEFCIAVSLSAFGCKVLCC 170 180 190 200 210 230 240 250 260 270 280 pF1KE1 RPKSNIVLLSAEEKKEQTIEIKEEVVGLTETSSQPKNEEDIEIIPIQEEEEEETETNFPE : . ...: .. . .: NP_683 TPGGVVLILPSHSHMAETASPTPLNEV 220 230 >>NP_076434 (OMIM: 606499) membrane-spanning 4-domains s (200 aa) initn: 240 init1: 140 opt: 202 Z-score: 226.2 bits: 49.3 E(85289): 7.4e-06 Smith-Waterman score: 212; 28.4% identity (59.1% similar) in 176 aa overlap (36-207:34-180) 10 20 30 40 50 60 pF1KE1 NSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFFMRESKTLGAVQIMNGLFHIA : .: :..: :. : ::..::. :.. .. NP_076 STAHSPVFLVFPPEITASEYESTELSATTFSTQSPLQKLFARKMKILGTIQILFGIMTFS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LGGL----LMIPAGIYAPICVTVWYPLWGGIMYIISGSLLAATEKNSRKCLVKGKMIMNS .: . :. : . :. ::.::....: ::..: :..... . :. . ::: NP_076 FGVIFLFTLLKPYPRF-PFIFLSGYPFWGSVLFINSGAFLIAVKRKTTETLIILSRIMNF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LSLFAAISGMILSIMDILNIKISHFLKMESLNFIRAHTPYINIYNCEPANPSEKNSPSTQ :: ..::.:.:: ...:: .. : : . :..:: NP_076 LSALGAIAGIILL----------------TFGFILDQN-----YIC---GYSHQNSQ--- 130 140 150 190 200 210 220 230 240 pF1KE1 YCYSIQSLFLGILSVMLIFAFFQELVIAGIVENEWKRTCSRPKSNIVLLSAEEKKEQTIE : .. :::::: ... :.... .. NP_076 -CKAVTVLFLGILITLMTFSIIELFISLPFSILGCHSEDCDCEQCC 160 170 180 190 200 >>NP_001230195 (OMIM: 606547) membrane-spanning 4-domain (186 aa) initn: 136 init1: 99 opt: 184 Z-score: 207.4 bits: 45.7 E(85289): 8.2e-05 Smith-Waterman score: 184; 32.6% identity (62.8% similar) in 129 aa overlap (7-129:22-148) 10 20 30 40 pF1KE1 MTTPRNSVNGTFPAEPMKGPIAMQSGPKPLFRRMSSLVGPTQSFF ...: : : :: . : : ... : : : : NP_001 MHQTYSRHCRPEESTFSAAMTTMQGMEQAMPGAGPGVPQLGNMAVIH--SHLWKGLQEKF 10 20 30 40 50 50 60 70 80 90 100 pF1KE1 MR-ESKTLGAVQIMNGLFHIALGGLLM-IPAGIYA--PICVTVWYPLWGGIMYIISGSL- .. : :.::.:::...:. ...: .: . .. :. :: : . : .::..:.:::::: NP_001 LKGEPKVLGVVQILTALMSLSMGITMMCMASNTYGSNPISVYIGYTIWGSVMFIISGSLS 60 70 80 90 100 110 110 120 130 140 150 pF1KE1 LAATEKNSRKCLVKGKMIMNSLSLFA-AISGMILSIMDILNIKISHFLKMESLNFIRAHT .:: .... . : ... :. : :.: NP_001 IAAGIRTTKGLGLDGMVLLLSVLEFCIAVSLSAFGCKVLCCTPGGVVLILPSHSHMAETA 120 130 140 150 160 170 297 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:23:34 2016 done: Sun Nov 6 23:23:35 2016 Total Scan time: 7.860 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]