(Circular) (Six-base) MAPSORT of: pFN21AE1319.seq Check: 1496 from: 1 to: 5644 pFN21AE1319 5644 bp With 182 enzymes: SgfI * August 16, 2010 14:45 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3454 278 Size: 53 83 186 936 1918 2468 Fragments arranged by size: 2468 1918 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2987 1937 Size: 1050 4594 Acc65I G'GTAC_C Cuts at: 2965 2965 Size: 5644 AclI AA'CG_TT Cuts at: 1563 3771 4144 1563 Size: 2208 373 3063 Fragments arranged by size: 3063 2208 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2753 2795 2904 3707 5091 5359 1632 Size: 1121 42 109 803 1384 268 1917 Fragments arranged by size: 1917 1384 1121 803 268 109 42 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5447 AflIII A'CryG_T Cuts at: 1203 2236 4543 5520 1203 Size: 1033 2307 977 1327 Fragments arranged by size: 2307 1327 1033 977 AgeI A'CCGG_T Cuts at: 4475 4475 Size: 5644 AhdI GACnn_n'nnGTC Cuts at: 4373 4373 Size: 5644 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5644 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5644 AlwNI CAG_nnn'CTG Cuts at: 2104 3387 4959 2104 Size: 1283 1572 2789 Fragments arranged by size: 2789 1572 1283 ApaI G_GGCC'C Cuts at: 2402 2402 Size: 5644 ApaLI G'TGCA_C Cuts at: 3701 4857 3701 Size: 1156 4488 ApoI r'AATT_y Cuts at: 1493 2213 2802 2953 3179 3331 5440 1493 Size: 720 589 151 226 152 2109 1697 Fragments arranged by size: 2109 1697 720 589 226 152 151 AseI AT'TA_AT Cuts at: 160 1032 4198 160 Size: 872 3166 1606 Fragments arranged by size: 3166 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5644 AvaI C'yCGr_G Cuts at: 1870 1943 2346 2969 1870 Size: 73 403 623 4545 Fragments arranged by size: 4545 623 403 73 BamHI G'GATC_C Cuts at: 2285 2342 2974 3341 2285 Size: 57 632 367 4588 Fragments arranged by size: 4588 632 367 57 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2159 2165 2965 4420 618 Size: 325 217 627 372 6 800 1455 1842 Fragments arranged by size: 1842 1455 800 627 372 325 217 6 BanII G_rGCy'C Cuts at: 1391 2402 2963 1391 Size: 1011 561 4072 Fragments arranged by size: 4072 1011 561 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2301 2892 928 Size: 971 402 591 3680 Fragments arranged by size: 3680 971 591 402 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3835 3869 1903 Size: 34 50 34 1814 34 3678 Fragments arranged by size: 3678 1814 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3536 4746 3536 Size: 1210 4434 BclI T'GATC_A Cuts at: 1548 1548 Size: 5644 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2035 4255 136 Size: 107 122 71 631 605 363 2220 1525 Fragments arranged by size: 2220 1525 631 605 363 122 107 71 BglII A'GATC_T Cuts at: 2560 5639 2560 Size: 3079 2565 BlpI GC'TnA_GC Cuts at: 3061 3061 Size: 5644 Bme1580I G_kGCm'C Cuts at: 1790 2162 2402 3705 4861 1790 Size: 372 240 1303 1156 2573 Fragments arranged by size: 2573 1303 1156 372 240 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5644 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2396 3375 4333 Size: 416 53 83 399 24 979 979 958 Cuts at: 4333 442 Size: 1753 Fragments arranged by size: 1753 979 979 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5644 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4304 1239 Size: 3065 2579 Bpu10I CC'TnA_GC Cuts at: 2840 2840 Size: 5644 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3769 4634 4932 3769 Size: 865 298 4481 Fragments arranged by size: 4481 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4307 882 Size: 617 2808 2219 Fragments arranged by size: 2808 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2706 3435 493 Size: 711 1502 729 2702 Fragments arranged by size: 2702 1502 729 711 BsaBI GATnn'nnATC Cuts at: 5638 5638 Size: 5644 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2067 2136 3451 3833 Size: 53 83 186 936 534 69 1315 382 Cuts at: 3833 4468 275 Size: 635 1451 Fragments arranged by size: 1451 1315 936 635 534 382 186 83 69 53 BsaWI w'CCGG_w Cuts at: 4077 4475 4749 4896 5307 4077 Size: 398 274 147 411 4414 Fragments arranged by size: 4414 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2084 2109 2114 2139 2255 Size: 30 165 30 681 25 5 25 116 Cuts at: 2255 2285 1178 Size: 30 4537 Fragments arranged by size: 4537 681 165 116 30 30 30 25 25 5 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2276 1186 Size: 1090 4554 BseYI C'CCAG_C Cuts at: 4847 5343 4847 Size: 496 5148 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5071 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2152 3094 3855 4883 1540 Size: 275 186 151 942 761 1028 2301 Fragments arranged by size: 2301 1028 942 761 275 186 151 BsiHKAI G_wGCw'C Cuts at: 3705 3790 4861 3705 Size: 85 1071 4488 Fragments arranged by size: 4488 1071 85 BsmI GAATG_Cn' Cuts at: 3155 3248 3155 Size: 93 5551 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2162 2402 2963 3705 3790 4861 1391 Size: 399 372 240 561 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 561 399 372 240 85 BspEI T'CCGG_A Cuts at: 5307 5307 Size: 5644 BspHI T'CATG_A Cuts at: 3533 5263 3533 Size: 1730 3914 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2999 844 Size: 2155 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2062 3531 1394 Size: 429 239 1469 3507 Fragments arranged by size: 3507 1469 429 239 BsrDI GCAATG_nn' Cuts at: 65 1248 4139 4313 65 Size: 1183 2891 174 1396 Fragments arranged by size: 2891 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2015 2034 2162 4288 4475 1700 Size: 110 205 19 128 2126 187 2869 Fragments arranged by size: 2869 2126 205 187 128 110 19 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5644 BssHII G'CGCG_C Cuts at: 1925 2192 1925 Size: 267 5377 BssSI C'ACGA_G Cuts at: 3704 4716 3704 Size: 1012 4632 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5644 BstBI TT'CG_AA Cuts at: 2851 4448 2851 Size: 1597 4047 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5644 BstXI CCAn_nnnn'nTGG Cuts at: 2011 2011 Size: 5644 BstYI r'GATC_y Cuts at: 1972 2112 2285 2342 2560 2974 3341 3726 3743 Size: 140 173 57 218 414 367 385 17 Cuts at: 3743 5195 5281 5293 5639 1972 Size: 1452 86 12 346 1977 Fragments arranged by size: 1977 1452 414 385 367 346 218 173 140 86 57 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 5092 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2668 487 Size: 683 56 1442 3463 Fragments arranged by size: 3463 1442 683 56 BtsI GCAGTG_nn' Cuts at: 3160 3954 3974 3160 Size: 794 20 4830 Fragments arranged by size: 4830 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5644 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5609 DraI TTT'AAA Cuts at: 2948 2948 Size: 5644 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4651 809 Size: 507 3335 1802 Fragments arranged by size: 3335 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2013 3091 3980 Size: 54 1425 50 275 18 183 1078 889 Cuts at: 3980 5609 8 Size: 1629 43 Fragments arranged by size: 1629 1425 1078 889 275 183 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3091 1537 Size: 275 1279 4090 Fragments arranged by size: 4090 1279 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3574 1353 Size: 2221 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2070 4231 4605 4751 387 Size: 1064 138 481 2161 374 146 1280 Fragments arranged by size: 2161 1280 1064 481 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2753 2795 2904 3707 4304 5091 5359 Size: 393 1121 42 109 803 597 787 268 Cuts at: 5359 1239 Size: 1524 Fragments arranged by size: 1524 1121 803 787 597 393 268 109 42 EcoRI G'AATT_C Cuts at: 2213 2953 3331 2213 Size: 740 378 4526 Fragments arranged by size: 4526 740 378 FspI TGC'GCA Cuts at: 2718 4150 2718 Size: 1432 4212 HaeII r_GCGC'y Cuts at: 1678 2579 4791 1678 Size: 901 2212 2531 Fragments arranged by size: 2531 2212 901 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2310 2342 2438 2470 4285 Size: 32 135 32 738 32 96 32 1815 Cuts at: 4285 4317 4359 4391 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1815 738 135 96 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2479 2988 3234 669 Size: 988 281 541 509 246 3079 Fragments arranged by size: 3079 988 541 509 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5644 HpaI GTT'AAC Cuts at: 3234 3234 Size: 5644 KpnI G_GTAC'C Cuts at: 2969 2969 Size: 5644 MfeI C'AATT_G Cuts at: 3243 3243 Size: 5644 MluI A'CGCG_T Cuts at: 5520 5520 Size: 5644 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2140 2942 4758 4942 1305 Size: 835 802 1816 184 2007 Fragments arranged by size: 2007 1816 835 802 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3822 Fragments arranged by size: 3822 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2009 2708 3602 3961 4120 518 Size: 648 843 699 894 359 159 2042 Fragments arranged by size: 2042 894 843 699 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2130 2638 3060 3737 4885 5130 1606 Size: 524 508 422 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 524 508 422 245 NaeI GCC'GGC Cuts at: 2017 2036 2017 Size: 19 5625 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 5092 NdeI CA'TA_TG Cuts at: 387 387 Size: 5644 NgoMIV G'CCGG_C Cuts at: 2015 2034 2015 Size: 19 5625 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5644 NotI GC'GGCC_GC Cuts at: 3091 3091 Size: 5644 NspI r_CATG'y Cuts at: 1132 1229 2188 3002 4547 1132 Size: 97 959 814 1545 2229 Fragments arranged by size: 2229 1545 959 814 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5644 PciI A'CATG_T Cuts at: 4543 4543 Size: 5644 PflMI CCAn_nnn'nTGG Cuts at: 1108 2408 1108 Size: 1300 4344 PmeI GTTT'AAAC Cuts at: 2948 2948 Size: 5644 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3713 3745 5226 5258 3713 Size: 32 1481 32 4099 Fragments arranged by size: 4099 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5644 PsiI TTA'TAA Cuts at: 3214 3214 Size: 5644 PspOMI G'GGCC_C Cuts at: 2398 2398 Size: 5644 PstI C_TGCA'G Cuts at: 830 2100 2996 830 Size: 1270 896 3478 Fragments arranged by size: 3478 1270 896 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5644 PvuII CAG'CTG Cuts at: 2638 2638 Size: 5644 SalI G'TCGA_C Cuts at: 1936 2986 1936 Size: 1050 4594 SbfI CC_TGCA'GG Cuts at: 2996 2996 Size: 5644 ScaI AGT'ACT Cuts at: 3892 5604 3892 Size: 1712 3932 SfcI C'TryA_G Cuts at: 826 1045 2096 2197 2992 4127 4808 4999 826 Size: 219 1051 101 795 1135 681 191 1471 Fragments arranged by size: 1471 1135 1051 795 681 219 191 101 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5644 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5644 SmaI CCC'GGG Cuts at: 1872 2971 1872 Size: 1099 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3748 4649 4911 820 Size: 197 926 1805 901 262 1553 Fragments arranged by size: 1805 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3435 493 Size: 2942 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5644 SphI G_CATG'C Cuts at: 1132 2188 3002 1132 Size: 1056 814 3774 Fragments arranged by size: 3774 1056 814 SspI AAT'ATT Cuts at: 5 52 3568 5 Size: 47 3516 2081 Fragments arranged by size: 3516 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5644 StyI C'CwwG_G Cuts at: 513 1065 2313 3083 513 Size: 552 1248 770 3074 Fragments arranged by size: 3074 1248 770 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3671 3688 3841 4026 4471 325 Size: 1255 2091 17 153 185 445 1498 Fragments arranged by size: 2091 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3890 5602 96 Size: 274 80 33 51 1443 1913 1712 138 Fragments arranged by size: 1913 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2255 2287 5604 5636 2255 Size: 32 3317 32 2263 Fragments arranged by size: 3317 2263 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5644 XbaI T'CTAG_A Cuts at: 2980 2980 Size: 5644 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5644 XmaI C'CCGG_G Cuts at: 1870 2969 1870 Size: 1099 4545 XmnI GAAnn'nnTTC Cuts at: 2889 3773 2889 Size: 884 4760 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3452 276 Size: 53 83 186 936 1918 2468 Fragments arranged by size: 2468 1918 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NarI NruI NsiI PacI PfoI PmlI PpuMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI