FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1319, 313 aa 1>>>pF1KE1319 313 - 313 aa - 313 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3529+/-0.000288; mu= 16.2815+/- 0.018 mean_var=72.2790+/-14.340, 0's: 0 Z-trim(118.3): 6 B-trim: 0 in 0/53 Lambda= 0.150858 statistics sampled from 31013 (31018) to 31013 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.364), width: 16 Scan time: 7.960 The best scores are: opt bits E(85289) NP_001062 (OMIM: 188350) thymidylate synthase [Hom ( 313) 2172 481.4 1e-135 >>NP_001062 (OMIM: 188350) thymidylate synthase [Homo sa (313 aa) initn: 2172 init1: 2172 opt: 2172 Z-score: 2557.3 bits: 481.4 E(85289): 1e-135 Smith-Waterman score: 2172; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313) 10 20 30 40 50 60 pF1KE1 MPVAGSELPRRPLPPAAQERDAEPRPPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPVAGSELPRRPLPPAAQERDAEPRPPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 MQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWDANGSRDFLDS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 AWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AWNPRDLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 TGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEG 250 260 270 280 290 300 310 pF1KE1 YNPHPTIKMEMAV ::::::::::::: NP_001 YNPHPTIKMEMAV 310 313 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 23:25:58 2016 done: Sun Nov 6 23:25:59 2016 Total Scan time: 7.960 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]